Browse Element(s) Details


OsAffx.17914.1.S1_at

Description tigr:9637.m02337
TID=OsAffx.17914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g142402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14210OsAffx.24244.1.S1_at11/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210Os.50043.1.A1_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210OsAffx.22711.4.A1_x_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.5.S1_x_at3/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.3.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.20729.1.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14230OsAffx.12031.1.S1_at9/112+7796193..7798258hypothetical protein
LOC_Os02g14240OsAffx.2606.1.S1_at11/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_at2/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.1436.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14250OsAffx.30613.1.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14260Os.46012.2.S1_x_at2/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.46012.3.S1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.27088.1.A1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14270OsAffx.12032.1.S1_at11/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.29203.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.10222.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270Os.47111.1.S1_at1/112+7826841..7830822hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17914.1.S1_at--336--8874Chr06:29842688..29842710 (23 bp)
TGATGAAGTCGCATAGCCGTGGATG
NONE
OsAffx.17914.1.S1_at--899--8994Chr07:8742059..8742078 (20 bp)
TGAAGTCGCATAGCCGTGGATGCGA
NONE
OsAffx.17914.1.S1_at--461--7231Chr09:16248113..16248137 (25 bp)
GTCGCATAGCCGTGGATGCGAAGAA
NONE
OsAffx.17914.1.S1_at--540--7351Chr09:16248058..16248082 (25 bp)
GTGAAGATGAAGGTGTCCAACAACA
NONE
OsAffx.17914.1.S1_at--994--7731Chr09:16248047..16248071 (25 bp)
GGTGTCCAACAACAGCGACAAAATC
NONE
OsAffx.17914.1.S1_at--1018--2151Chr09:16248036..16248060 (25 bp)
ACAGCGACAAAATCGTGCAGCCATG
NONE
OsAffx.17914.1.S1_at--663--4591Chr09:16248033..16248057 (25 bp)
GCGACAAAATCGTGCAGCCATGGTG
NONE
OsAffx.17914.1.S1_at--910--2192Chr06:18973234..18973558 (25 bp)
ACAAAATCGTGCAGCCATGGTGGCG
NONE
OsAffx.17914.1.S1_at--251--96523Chr12:18761335..18761465 (25 bp)
TCAGTCGGTGACAGACGAGCCAATA
NONE
OsAffx.17914.1.S1_at--787--7191Chr09:16247996..16248020 (25 bp)
GTCGGTGACAGACGAGCCAATAGTC
NONE
OsAffx.17914.1.S1_at--820--5631Chr09:16247990..16248014 (25 bp)
GACAGACGAGCCAATAGTCGGTGAC
NONE
Target Sequence 
TGATGAAGTCGCATAGCCGTGGATGCGAAGAAACCAGTCGGCAGCAGACAAGTCAGCCAGCAGTGAAGATGAAGGTGTCC
AACAACAGCGACAAAATCGTGCAGCCATGGTGGCGAAATAATCAGTCGGTGACAGACGAGCCAATAGTCGGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis