Browse Element(s) Details


OsAffx.12032.1.S1_at

Description tigr:9630.m01327
TID=OsAffx.12032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1427011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14240OsAffx.2606.1.S1_at11/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_at2/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.1436.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14250OsAffx.30613.1.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14260Os.46012.2.S1_x_at2/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.46012.3.S1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.27088.1.A1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14270OsAffx.12032.1.S1_at11/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.29203.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.10222.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270Os.47111.1.S1_at1/112+7826841..7830822hypothetical protein
LOC_Os02g14280Os.14919.1.S1_at5/112+7839604..7843406transposon protein, putative, Mutator sub-class
LOC_Os02g14280Os.56216.1.S1_at3/112+7839604..7843406transposon protein, putative, Mutator sub-class
LOC_Os02g14280OsAffx.29313.1.S1_at1/112+7839604..7843406transposon protein, putative, Mutator sub-class
LOC_Os02g14290Os.24764.1.S1_a_at11/112+7845988..7852176Scramblase family protein, expressed
LOC_Os02g14300NANA2+7851979..7854421hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12032.1.S1_at--187--4391Chr02:7827745..7828027 (25 bp)
GCCACGTCGGGATTTTAGAAAGAAT
LOC_Os02g14270
OsAffx.12032.1.S1_at--199--5291Chr02:7827724..7827748 (25 bp)
GAATGTCACTGAAAACTGCCTACCA
LOC_Os02g14270
OsAffx.12032.1.S1_at--435--2391Chr02:7827712..7827736 (25 bp)
AAACTGCCTACCATTTTCTCTTGGA
LOC_Os02g14270
OsAffx.12032.1.S1_at--820--4231Chr02:7827611..7827635 (25 bp)
CCGATGAACTTGCTGAGTGCTTTTC
LOC_Os02g14270
OsAffx.12032.1.S1_at--655--4891Chr02:7827593..7827617 (25 bp)
GCTTTTCATCATTGACTGGCTGGAG
LOC_Os02g14270
OsAffx.12032.1.S1_at--1022--291Chr02:7827561..7827585 (25 bp)
ATAGCTTCCATGATATCCTTTTTTG
LOC_Os02g14270
OsAffx.12032.1.S1_at--1117--8151Chr02:7827495..7827519 (25 bp)
GGAACAAGTGAACCTATGTGCTTTC
LOC_Os02g14270
OsAffx.12032.1.S1_at--999--3691Chr02:7827482..7827506 (25 bp)
CTATGTGCTTTCTGGACTTTCTAAA
LOC_Os02g14270
OsAffx.12032.1.S1_at--22--5391Chr02:7827457..7827481 (25 bp)
GAAGCAATTTGATATGACAGCCACA
LOC_Os02g14270
OsAffx.12032.1.S1_at--196--7591Chr02:7827277..7827301 (25 bp)
GGGCTTCGGTTTTCTGTCTAGCAGA
LOC_Os02g14270
OsAffx.12032.1.S1_at--471--2531Chr02:7827252..7827276 (25 bp)
AACTCTGCTAGTGCAAAGTCTCTTG
LOC_Os02g14270
Target Sequence 
GCCACGTCGGGATTTTAGAAAGAATGTCACTGAAAACTGCCTACCATTTTCTCTTGGAGATGTCTTATTATTTGGAAACA
AGTATAATATGGACATCACTGAGGAGCTTCAAGATGTTTTCTTAGATTGTCGTGCCGATGAACTTGCTGAGTGCTTTTCA
TCATTGACTGGCTGGAGATACAAAATAGCTTCCATGATATCCTTTTTTGAAGATTGTGGTTCTCAGTATGATATGCTTCT
TGAGGATGATGGAACAAGTGAACCTATGTGCTTTCTGGACTTTCTAAAGAAGCAATTTGATATGACAGCCACAGCTTTAA
AGAAATGCATAATGAATTTGTTGATTCACCTTCCTAGGAAGTGCTTTTCAGTTGATAGTATCAATAATATATCCATGCTA
TTGGATTTATTAGAAAAAGTTGAAGCCCTTTTATGTCATGAAGCTTTAACTGATAATGTTGTGAAGAGGGGCTTCGGTTT
TCTGTCTAGCAGAAACTCTGCTAGTGCAAAGTCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis