Browse Element(s) Details


Os.47111.1.S1_at

Description gb:CB646819
DB_XREF= gi:29641812
DB_XREF=OSJNEb09H19.f
CLONE=OSJNEb09H19
TID=Os.47111.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47111 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g142701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14240OsAffx.2606.1.S1_at11/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_at2/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.1436.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.8939.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14240OsAffx.17914.1.S1_x_at1/112+7807964..7808868hypothetical protein
LOC_Os02g14250OsAffx.30613.1.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_x_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14250OsAffx.30613.3.S1_at11/112+7813507..7815858hAT family dimerisation domain containing protein
LOC_Os02g14260Os.46012.2.S1_x_at2/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.46012.3.S1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14260Os.27088.1.A1_x_at1/112+7821443..7825721retrotransposon protein, putative, unclassified
LOC_Os02g14270OsAffx.12032.1.S1_at11/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.29203.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270OsAffx.10222.1.S1_x_at2/112+7826841..7830822hypothetical protein
LOC_Os02g14270Os.47111.1.S1_at1/112+7826841..7830822hypothetical protein
LOC_Os02g14280Os.14919.1.S1_at5/112+7839604..7843406transposon protein, putative, Mutator sub-class
LOC_Os02g14280Os.56216.1.S1_at3/112+7839604..7843406transposon protein, putative, Mutator sub-class
LOC_Os02g14280OsAffx.29313.1.S1_at1/112+7839604..7843406transposon protein, putative, Mutator sub-class
LOC_Os02g14290Os.24764.1.S1_a_at11/112+7845988..7852176Scramblase family protein, expressed
LOC_Os02g14300NANA2+7851979..7854421hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47111.1.S1_at--627--1791Chr02:7834626..7834650 (25 bp)
ACCCGGCTACCGCTAGAATGGTCAT
NONE
Os.47111.1.S1_at--684--4211Chr02:7834635..7834659 (25 bp)
CCGCTAGAATGGTCATCATCGGCGA
NONE
Os.47111.1.S1_at--988--1091Chr02:7834842..7834866 (25 bp)
AGTGGATACGGTGTCGCTCAGCAGC
NONE
Os.47111.1.S1_at--754--7451Chr02:7834852..7834876 (25 bp)
GTGTCGCTCAGCAGCGGCCGGCAAC
NONE
Os.47111.1.S1_at--311--4471Chr02:7834958..7834982 (25 bp)
GCCTGCCGACGCACCGATGGCGATG
NONE
Os.47111.1.S1_at--967--1112Chr02:7835036..7835060 (25 bp)
TAGTGGGTCCCACATCGTTTTTCGC
NONE
Os.47111.1.S1_at--653--512Chr02:7835049..7835073 (25 bp)
ATCGTTTTTCGCTCAATGTTGCCAT
NONE
Os.47111.1.S1_at--172--10372Chr02:7835053..7835077 (25 bp)
TTTTTCGCTCAATGTTGCCATGTTG
NONE
Os.47111.1.S1_at--845--8771Chr02:7835073..7835097 (25 bp)
TGTTGGCTTGCCACGTGGGTAAAAG
NONE
Os.47111.1.S1_at--1154--5117Chr12:4024860..4024879 (20 bp)
GCAAATAGTTAAGAAGCCACCTCTT
NONE
Os.47111.1.S1_at--144--9791Chr02:7829093..7829113 (21 bp)
TAAGAAGCCACCTCTTAAGAAAGGA
LOC_Os02g14270
Target Sequence 
ACCCGGCTACCGCTAGAATGGTCATCATCGGCGACCAAACGACCACGCCCACCGCCGCCAGGAAACCTCGCCGTGCACCG
CCGTCGTCCATCACCTTCTATCCCTCACTCGCAAGTCGCACCGCACCACAACAACACAAGAAAAGGGAGGCGAACGATGG
AGGGAGATATTGCGGCGGCGTCGGGGGTGGACGCGGCGGCGTTCGGCGGCATCAGGAGTGGATACGGTGTCGCTCAGCAG
CGGCCGGCAACGGGGACGGCATAAGGGGAAGGCAGAGGTGGCGGCGCGGAGGAGGCGCTGAAGAGAGACAGGGAGAGGGT
GCAGGCGGTTGCGCCTGCCGACGCACCGATGGCGATGGTGCGCGTGAGGAAGAAGGCCTGCGAAGGGAGATGAAGTGGAA
GGAGACTGACTAGTGGGTCCCACATCGTTTTTCGCTCAATGTTGCCATGTTGGCTTGCCACGTGGGTAAAAGTGGCAAAT
AGTTAAGAAGCCACCTCTTAAGAAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis