Browse Element(s) Details


OsAffx.29203.1.S1_x_at

Description tigr:9635.m02675
TID=OsAffx.29203.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g718103/11Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os02g142702/11hypothetical protein
LOC_Os11g347201/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71840OsAffx.28220.1.S1_s_at10/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71840Os.44572.1.S1_x_at9/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0016311biological_processdephosphorylation
GO:0030643biological_processphosphate ion homeostasis
GO:0009986cellular_componentcell surface
GO:0031225cellular_componentanchored to membrane
GO:0003993molecular_functionacid phosphatase activity
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0008810molecular_functioncellulase activity
GO:0016791molecular_functionphosphoric monoester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29203.1.S1_x_at--904--511Chr01:37939261..37939285 (25 bp)
ATCGAGTAACTTCCACGCCTGTCCA
NONE
OsAffx.29203.1.S1_x_at--769--4451Chr01:37939246..37939269 (24 bp)
GCCTGTCCATTTAGCAAACCTACGA
NONE
OsAffx.29203.1.S1_x_at--7--3551Chr01:37938868..37939262 (25 bp)
CATTTAGCAAACCTACGACCTCTAG
NONE
OsAffx.29203.1.S1_x_at--808--10011NONE
TAGCAAACCTACGACCTCTAGAAAA
NONE
OsAffx.29203.1.S1_x_at--997--9895Chr10:11589853..11589873 (21 bp)
TACGACCTCTAGAAAAACTTATCCT
NONE
OsAffx.29203.1.S1_x_at--1084--83741Chr12:6741894..6742176 (25 bp)
GGCGATGCTGAGGAACTCACAGGAA
NONE
OsAffx.29203.1.S1_x_at--660--8179Chr11:16968921..16968945 (25 bp)
GGAACTCACAGGAATCAACCATGTA
NONE
OsAffx.29203.1.S1_x_at--485--32769Chr11:16968957..16968981 (25 bp)
CAAACGGACGAAATATGTGGCATGT
NONE
OsAffx.29203.1.S1_x_at--275--2771Chr12:15006759..15006783 (25 bp)
ATATGTGGCATGTGGAATTTTCCAA
NONE
OsAffx.29203.1.S1_x_at--523--103991Chr12:15006790..15006810 (21 bp)
TTCTACCGAAAAACTTCTCTCCTCG
NONE
OsAffx.29203.1.S1_x_at--782--4272Chr11:9413874..9414326 (25 bp)
CCTGATTCCGAGTCCAGAAACAGAA
NONE
Target Sequence 
ATCGAGTAACTTCCACGCCTGTCCATTTAGCAAACCTACGACCTCTAGAAAAACTTATCCTAAAAATGGTCCTTTTTGGG
GCGCCAGAGTGGCCGGTGCCGTCGTCCAACAGGACGGCGCCAGCCTCTCTGGCGCCGTCCCCCTGCTGACGTGGCGGGGC
GATGCTGAGGAACTCACAGGAATCAACCATGTAAAAAATAAACTCAAACGGACGAAATATGTGGCATGTGGAATTTTCCA
AAGTTCTACCGAAAAACTTCTCTCCTCGAAAACACAATCTTGCAAGCGGAATTTGGAGGTTTTAATATCGCCGAACCCGG
CAAAGCGGGGGAGAATCGGATGTAACATTTTCTGTAGATGTCCGTGCATATATTATTTGCCTGATTCCGAGTCCAGAAAC
AGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29203.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis