Browse Element(s) Details


Os.34520.1.S1_at

Description gb:AK071060.1
DB_XREF= gi:32981083
TID=Os.34520.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34520 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0660F12.31), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080K20, full insert sequence.
FL= gb:AK071060.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7179011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71840OsAffx.28220.1.S1_s_at10/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed
LOC_Os01g71840Os.44572.1.S1_x_at9/111+41932540..41947971retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34520.1.S1_at--1140--6311Chr01:41911613..41911637 (25 bp)
GATGCACAGCTCCACCAAGAACGGG
LOC_Os01g71790
Os.34520.1.S1_at--884--3231Chr01:41911628..41911652 (25 bp)
CAAGAACGGGCAGTCCGTGACCGAC
LOC_Os01g71790
Os.34520.1.S1_at--620--7291Chr01:41911665..41911689 (25 bp)
GTGCGGTGGTGCAGGATCAACTACT
LOC_Os01g71790
Os.34520.1.S1_at--630--991Chr01:41911677..41911701 (25 bp)
AGGATCAACTACTGCTTCTACGTGC
LOC_Os01g71790
Os.34520.1.S1_at--141--9471Chr01:41911807..41911831 (25 bp)
TCTGGGTTCTCTGCCATGTCAGGAA
LOC_Os01g71790
Os.34520.1.S1_at--515--6032Chr01:41921949..41921973 (25 bp)
GAGATCACGAGGTTTGCCTCGCGTT
NONE
Os.34520.1.S1_at--176--9352Chr01:41921967..41921991 (25 bp)
TCGCGTTGGGATTCGACTTCGGTTA
NONE
Os.34520.1.S1_at--761--5193Chr01:41922005..41922029 (25 bp)
GAATTGTGTTCCTTTGCTTTATTCC
NONE
Os.34520.1.S1_at--374--3832Chr01:41922041..41922065 (25 bp)
CTGCCCATACATTCCGTGTGATGAA
NONE
Os.34520.1.S1_at--167--2172Chr01:41922065..41922089 (25 bp)
ACACTGCGAATCAAATGGGACGTTT
NONE
Os.34520.1.S1_at--600--7412Chr01:41922115..41922139 (25 bp)
GTGATTGAATTCATGGCCTCTTTCT
NONE
Target Sequence 
GATGCACAGCTCCACCAAGAACGGGCAGTCCGTGACCGACCTCGGCGTGGTGGTGCGGTGGTGCAGGATCAACTACTGCT
TCTACGTGCGCGGCGAGATGGGGCAGCAGCGGAGCACCGGGTGGATGATGGCCGAGTACGAGATCACCGANCCGCGGTGC
TACCGCCGCGCCGACGACGGCGAGGAGGACGACTTCTGGGTTCTCTGCCATGTCAGGAAGAGCTCGAGNCCCCAAGCCGC
CAAGATCTCTCCAGCCAAGCCAGCACGGCNGCGCAAGCCCGCCGCCGCCGCCGCCGCGGATGTCCGGGCTGCGTGATCCG
GCCGACGGCGGAGATCACGAGGTTTGCCTCGCGTTGGGATTCGACTTCGGTTATACTTNTGCTTTGGAATTGTGTTCCTT
TGCTTTATTCCNCCTCTAGCATCTGCCCATACATTCCGTGTGATGAACACTGCGAATCAAATGGGACGTTTAAGATGTTG
TTGTTGTACTGATAGCGTGATTGAATTCATGGCCTCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34520.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis