Browse Element(s) Details


Os.8935.2.S1_x_at

Description gb:NM_189757.1
DB_XREF= gi:34906597
GEN=P0660F12.29
TID=Os.8935.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8935 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RNA-binding like protein (P0660F12.29), mRNA.
PROD=putative RNA-binding like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7177011/11RNA-binding like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71830Os.18664.2.S1_x_at4/111+41930154..41931501Glucan endo-1,3-beta-glucosidase GV, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8935.2.S1_x_at--798--2731Chr01:41902149..41902173 (25 bp)
AAGAAGTCAGATATCCTCCAAGCAG
LOC_Os01g71770
Os.8935.2.S1_x_at--566--4971Chr01:41902120..41902144 (25 bp)
GCATCTCAGGGTGGCTATGGTGCAT
LOC_Os01g71770
Os.8935.2.S1_x_at--509--10231Chr01:41902058..41902082 (25 bp)
TTTGGGTGCACCTACTCTGTATGAC
LOC_Os01g71770
Os.8935.2.S1_x_at--399--7951Chr01:41901917..41901941 (25 bp)
GGATACTATGGATCCTCCCAAGGAA
LOC_Os01g71770
Os.8935.2.S1_x_at--654--6511Chr01:41901879..41901903 (25 bp)
GATATTTGTTGGCAGGCTTCCACAA
LOC_Os01g71770
Os.8935.2.S1_x_at--983--6171Chr01:41901842..41901866 (25 bp)
GAGGACCTAAGGCATTACTTTGGCA
LOC_Os01g71770
Os.8935.2.S1_x_at--19--7891Chr01:41901681..41901705 (25 bp)
GGTTTTGTCACCTTTGCTGATGAGG
LOC_Os01g71770
Os.8935.2.S1_x_at--565--1271Chr01:41901649..41901673 (25 bp)
AGATCGGGTAGCTCGCAGAAGTCAT
LOC_Os01g71770
Os.8935.2.S1_x_at--911--3091Chr01:41901479..41901503 (25 bp)
AATAGACACTGCTGCACCACTTGAG
LOC_Os01g71770
Os.8935.2.S1_x_at--954--5011Chr01:41901384..41901408 (25 bp)
GCAGGTTCTGCAGTGGTATCGACTA
LOC_Os01g71770
Os.8935.2.S1_x_at--424--6551Chr01:41901179..41901200 (22 bp)
GATTACGGTTATGGTCACAGCGGAA
LOC_Os01g71770
Target Sequence 
AAGAAGTCAGATATCCTCCAAGCAGGGGGGCATCTCAGGGTGGCTATGGTGCATATAATGCATACATTTCAGCAGCTACC
AGATATGCAGCTTTGGGTGCACCTACTCTGTATGACCATCCAGGGTCAGCTTATGGAAGAGGAGGATACTATGGATCCTC
CCAAGGAATGGGCAACAAAAAGATATTTGTTGGCAGGCTTCCACAAGAGGCAAACACGGAGGACCTAAGGCATTACTTTG
GCAAATTTGGCCGAATTGTGGATGCATATATCCCAAAGGACCCTAAAAGAAGTGGACATCGAGGTTTTGGTTTTGTCACC
TTTGCTGATGAGGGTGTGGCAGATCGGGTAGCTCGCAGAAGTCATGAAATTCTAGGACATGAGGTTGCAATAGACACTGC
TGCACCACTTGAGGGTGACTCTGGTGGTGGTTACATGGAACCCATGGATCTTTATGGGGCTTATGGTTCAATGCGAACTT
ATGGCAGGTTCTGCAGTGGTATCGACTATGATTACGGTTATGGTCACAGCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8935.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis