Browse Element(s) Details


OsAffx.11817.2.S1_x_at

Description gb:NM_189756.1
DB_XREF= gi:34906595
GEN=P0660F12.28
TID=OsAffx.11817.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~similar to GABA permease (P0660F12.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7176011/11amino acid permease family protein, putative
LOC_Os01g717407/11Amino acid permease family protein, expressed
LOC_Os01g717001/11amino acid permease family protein, putative
LOC_Os01g717201/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71780Os.33738.1.S1_at11/111+41909073..41910780transducin family protein, putative, expressed
LOC_Os01g71790Os.34520.1.S1_at11/111+41911216..41912136expressed protein
LOC_Os01g71800OsAffx.21875.1.S1_at11/111+41912754..41913912Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os01g71810Os.18664.2.S1_x_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_a_at11/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810Os.18664.1.S1_x_at5/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71810OsAffx.29203.1.S1_x_at3/111+41919078..41921730Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_x_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.1.S1_a_at11/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed
LOC_Os01g71820Os.18664.2.S1_x_at8/111+41924132..41925538Glucan endo-1,3-beta-glucosidase GV, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11817.2.S1_x_at--757--1532Chr01:41898268..41898292 (25 bp)
AGCTTCCACCGGAGGTACGGCACCG
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--1148--5872Chr01:41898237..41898261 (25 bp)
GAGCGCTCGCCTGCCTGGGTGTCAT
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--940--7972Chr01:41898190..41898214 (25 bp)
GGATCCGCGTGCATCACCAGCAACT
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--988--8512Chr01:41898102..41898126 (25 bp)
TGGACAGCCGCGAGGTGCCCCTCAA
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--602--7552Chr01:41898056..41898079 (24 bp)
GTGGCCTTCGTCATGGCTCTCACGT
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--743--8291Chr01:41897917..41897941 (25 bp)
GGCTTTCCAGGCGATGGTGTCGATC
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--207--6391Chr01:41897896..41897920 (25 bp)
GATCGCGACGCTGGGTTTGTTGATC
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--878--9432Chr01:41897675..41897699 (25 bp)
TCGGTGGCGTGCTGCTGCTCAGCCT
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--1052--1671Chr01:41897655..41897679 (25 bp)
AGCCTCGTCGCGTGGGTGCTTCACG
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--484--7691Chr01:41897642..41897666 (25 bp)
GGGTGCTTCACGCTCGCTTCTGGTT
LOC_Os01g71760
OsAffx.11817.2.S1_x_at--87--9354Chr01:41897629..41897653 (25 bp)
TCGCTTCTGGTTCCAAGGGCCTGTC
LOC_Os01g71760
Target Sequence 
AGCTTCCACCGGAGGTACGGCACCGGCGCCGGAGCGCTCGCCTGCCTGGGTGTCATCGCCGTCGCCATCTTCCTCTGCGG
ATCCGCGTGCATCACCAGCAACTCGAGGATGGGGTACGCGTTCTCGAGGGACGGCGCGATGCCGCTGTCGCGCGTGTGGC
ACCGCGTGGACAGCCGCGAGGTGCCCCTCAACGTCGTCTGGCTCTCCGTCGCCGTGGCCTTCGTCATGGCTCTCACGTCG
CTGGGGAGTCAGGTGGCTTTCCAGGCGATGGTGTCGATCGCGACGCTGGGTTTGTTGATCGCGTGCGCGCTGCCGGTGTT
TTTCCGCGTGACGACGGCGCGGAGATCGTTCGTGCGCGGGCCGTTCCACCTCGGCAAGTACGGGGTCATCGTCGGCTGGG
TGGGTGTGGTGTGGGTGGCCACCGTCACGGTGCTCTTCTCGCTGCCGGTGGCGTACCCGGTGGCCAAGGAGACGTTCAAC
TACACGCCGGTGGCCGTCGGTGGCGTGCTGCTGCTCAGCCTCGTCGCGTGGGTGCTTCACGCTCGCTTCTGGTTCCAAGG
GCCTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11817.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis