Browse Element(s) Details


OsAffx.11817.3.S1_at

Description gb:NM_189753.1
DB_XREF= gi:34906589
GEN=P0660F12.25
TID=OsAffx.11817.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) contains EST AU031682(R0503)~similar to GABA permease~unknown protein (P0660F12.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7171011/11Amino acid permease family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71740Os.18689.1.S1_at11/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.2.S1_x_at7/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71740OsAffx.11817.1.S1_x_at1/111+41890831..41893436Amino acid permease family protein, expressed
LOC_Os01g71750OsAffx.24007.1.S1_at11/111+41894022..41894426hypothetical protein
LOC_Os01g71760OsAffx.11817.2.S1_x_at11/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71760OsAffx.11817.1.S1_x_at1/111+41897599..41900156amino acid permease family protein, putative
LOC_Os01g71770Os.8935.1.S1_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.8935.2.S1_x_at11/111+41900757..41905683RNA-binding like protein, putative, expressed
LOC_Os01g71770Os.54957.1.S1_at1/111+41900757..41905683RNA-binding like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015326molecular_functioncationic amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11817.3.S1_at--171--3271Chr01:41879437..41879583 (25 bp)
CAACTCAAGGGATGGCGCGATGCCG
LOC_Os01g71710
OsAffx.11817.3.S1_at--12--2891Chr01:41879431..41879454 (24 bp)
AAGGGATGGCGCGATGCCGTTGTCG
LOC_Os01g71710
OsAffx.11817.3.S1_at--413--3771Chr01:41879327..41879351 (25 bp)
CTCTCACGGTGAATTATTATATTCC
LOC_Os01g71710
OsAffx.11817.3.S1_at--410--3131Chr01:41879316..41879340 (25 bp)
AATTATTATATTCCGAGTTGCACGC
LOC_Os01g71710
OsAffx.11817.3.S1_at--1--1251Chr01:41879301..41879325 (25 bp)
AGTTGCACGCGTTGCTGCTTCTGTT
LOC_Os01g71710
OsAffx.11817.3.S1_at--1152--9251Chr01:41879275..41879298 (24 bp)
TCCTGCGTGCGCTGCTCTGACACGT
LOC_Os01g71710
OsAffx.11817.3.S1_at--576--7271Chr01:41879107..41879131 (25 bp)
GTGCCAGGGCCGTTCAACCTCGGAA
LOC_Os01g71710
OsAffx.11817.3.S1_at--319--4411Chr01:41879105..41879129 (25 bp)
GCCAGGGCCGTTCAACCTCGGAAAG
LOC_Os01g71710
OsAffx.11817.3.S1_at--645--6811Chr01:41879006..41879030 (25 bp)
GTACCCGGTCGCCAATAAGGAGACG
LOC_Os01g71710
OsAffx.11817.3.S1_at--898--7791Chr01:41879000..41879024 (25 bp)
GGTCGCCAATAAGGAGACGTTCAAC
LOC_Os01g71710
OsAffx.11817.3.S1_at--706--8611Chr01:41878927..41878951 (25 bp)
TGGGTGCTCCATGCTCGGTTCTGGT
LOC_Os01g71710
Target Sequence 
CAACTCAAGGGATGGCGCGATGCCGTTGTCGCGCGTGTGGTACAGGGTGAACAAGCACGAGGTGCCTCTCAACGTCGTCT
GGCTCGCCGTCGCCGTGGCCTTCTTCATGGCTCTCACGGTGAATTATTATATTCCGAGTTGCACGCGTTGCTGCTTCTGT
TCCTCCTGCGTGCGCTGCTCTGACACGTCGCTGGGGAGCCAGGTGGCGTTCCAGGCGTTGGGCTCGATCGCGACGCTGGG
GATGTACATCGCGTACGCGCTGCCTGTGTTTTTCCGCGTGACGACGGCGCGGAGATCGTTCGTGCCAGGGCCGTTCAACC
TCGGAAAGTACGGGGTTCTCGTCGGCTGGGTGGGTGTGGTGTGGGTGGCCACCGTCACGGTGCTCTTCTCGCTGCCGGTG
GCGTACCCGGTCGCCAATAAGGAGACGTTCAACTACACTCCGGTGGCCGTCGGCGGCGTGTTGCTGCTCAGCGTCGGCGC
GTGGGTGCTCCATGCTCGGTTCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11817.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis