Browse Element(s) Details


Os.1385.1.S1_at

Description gb:AF443600.1
DB_XREF= gi:17149107
TID=Os.1385.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.1385 (NCBI UniGene Cluster)
DEF=Oryza sativa endo-1,3-beta-glucanase mRNA, complete cds.
PROD=endo-1,3-beta-glucanase
FL= gb:AK070056.1 gb:AF443600.1 gb:AF030166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7167010/11Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1385.1.S1_at--558--6891Chr01:41860401..41860425 (25 bp)
GTATCCCATCCGGTTCTAAGTCAGA
LOC_Os01g71670
Os.1385.1.S1_at--156--9291Chr01:41860393..41860417 (25 bp)
TCCGGTTCTAAGTCAGATGCTGCAT
LOC_Os01g71670
Os.1385.1.S1_at--59--6351Chr01:41860378..41860402 (25 bp)
GATGCTGCATCGGATCGACATAGCA
LOC_Os01g71670
Os.1385.1.S1_at--994--491Chr01:41860370..41860394 (25 bp)
ATCGGATCGACATAGCAGCTACTGA
LOC_Os01g71670
Os.1385.1.S1_at--234--5071Chr01:41860356..41860380 (25 bp)
GCAGCTACTGAAAGCTCTTGCTCGT
LOC_Os01g71670
Os.1385.1.S1_at--194--1591Chr01:41860344..41860368 (25 bp)
AGCTCTTGCTCGTATGCATCCTTAA
LOC_Os01g71670
Os.1385.1.S1_at--65--9091Chr01:41860338..41860362 (25 bp)
TGCTCGTATGCATCCTTAAAATTAA
LOC_Os01g71670
Os.1385.1.S1_at--1150--2251NONE
AAATAAGCTAGCTGCAACTGCAAGC
NONE
Os.1385.1.S1_at--350--1111Chr01:41860253..41860277 (25 bp)
AGTGTGCAGCACGTATGGTGTGCCT
LOC_Os01g71670
Os.1385.1.S1_at--672--10111Chr01:41860240..41860264 (25 bp)
TATGGTGTGCCTGCGATTCTCAAAT
LOC_Os01g71670
Os.1385.1.S1_at--207--4631Chr01:41860228..41860252 (25 bp)
GCGATTCTCAAATTCCAGAATTAAT
LOC_Os01g71670
Target Sequence 
GTATCCCATCCGGTTCTAAGTCAGATGCTGCATCGGATCGACATAGCAGCTACTGAAAGCTCTTGCTCGTATGCATCCTT
AAAATTAACTGTAAACTAAAAATAAGCTAGCTGCAACTGCAAGCAGAGCAGTAGAAATAATCAATCAGTAATAAAGTGTG
CAGCACGTATGGTGTGCCTGCGATTCTCAAATTCCAGAATTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis