Browse Element(s) Details


OsAffx.2458.1.S1_at

Description tigr:9629.m07089
TID=OsAffx.2458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7168011/11Glucan endo-1,3-beta-glucosidase GII precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed
LOC_Os01g71700OsAffx.11817.1.S1_x_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.1.S1_at11/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.2.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71700OsAffx.11817.3.S1_x_at1/111+41875965..41877872amino acid permease family protein, putative
LOC_Os01g71710OsAffx.11817.3.S1_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.3.S1_x_at11/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71710OsAffx.11817.1.S1_x_at1/111+41878886..41881353Amino acid permease family protein
LOC_Os01g71720Os.34273.1.S1_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.34273.2.S1_x_at11/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720Os.8825.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed
LOC_Os01g71720OsAffx.11817.2.S1_x_at1/111+41881733..41886188Amino acid permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0031225cellular_componentanchored to membrane
GO:0004338molecular_functionglucan 1,3-beta-glucosidase activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2458.1.S1_at--411--7231Chr01:41864354..41864378 (25 bp)
GTCCACGGCGGTGAAGCTAGACGTC
LOC_Os01g71680
OsAffx.2458.1.S1_at--317--3331Chr01:41864351..41864375 (25 bp)
CACGGCGGTGAAGCTAGACGTCGTC
LOC_Os01g71680
OsAffx.2458.1.S1_at--148--7751Chr01:41864345..41864369 (25 bp)
GGTGAAGCTAGACGTCGTCACCAAC
LOC_Os01g71680
OsAffx.2458.1.S1_at--789--8451Chr01:41864271..41864295 (25 bp)
TGGCCAAGCTCCTGGCGAGCACCGG
LOC_Os01g71680
OsAffx.2458.1.S1_at--612--7631Chr01:41864010..41864034 (25 bp)
GGGACTCGGCCACGATCGACATCGC
LOC_Os01g71680
OsAffx.2458.1.S1_at--601--5671Chr01:41863993..41864017 (25 bp)
GACATCGCGCGGACCTACGTGCAGA
LOC_Os01g71680
OsAffx.2458.1.S1_at--603--4671Chr01:41863985..41864009 (25 bp)
GCGGACCTACGTGCAGAACCTGATT
LOC_Os01g71680
OsAffx.2458.1.S1_at--1092--5831Chr01:41863982..41864006 (25 bp)
GACCTACGTGCAGAACCTGATTAAG
LOC_Os01g71680
OsAffx.2458.1.S1_at--892--3411Chr01:41863972..41863996 (25 bp)
CAGAACCTGATTAAGCATGCGAAGA
LOC_Os01g71680
OsAffx.2458.1.S1_at--35--7611Chr01:41863875..41863899 (25 bp)
GGGAAGCCACGGAGCAAAACTTTGG
LOC_Os01g71680
OsAffx.2458.1.S1_at--292--5031Chr01:41863862..41863886 (25 bp)
GCAAAACTTTGGAGCCTTCTACCCT
LOC_Os01g71680
Target Sequence 
GTCCACGGCGGTGAAGCTAGACGTCGTCACCAACACGTTCCCGCCCTCGGCCGGCGTGTTCGCGGCGCCCTACATGACGG
CCGTGGCCAAGCTCCTGGCGAGCACCGGCGCGCCGCTGCTCGCCAACATCTACCCCTACTTCGCCTACATCGGCAACAAG
AAGGACATCAGCCTCAACTACGCCACGTTCCAGGCCGGCACGACGGTGCCCGACCCCAACACCGGCCTGGTCTACACCAA
CCTGTTCGACGCCATGGTCGACTCCGTCTACGCCGCGCTGGACAAGGCCGGCGCGGCGGGCGTCAGCATCGTCGTGTCGG
AGAGCGGGTGGCCGTCGGCCGGCGGGGACTCGGCCACGATCGACATCGCGCGGACCTACGTGCAGAACCTGATTAAGCAT
GCGAAGAAGGGGACGCCGAAGCGGCCCGGGGTGATCGAGACGTACGTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGG
GGAAGCCACGGAGCAAAACTTTGGAGCCTTCTACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis