Browse Element(s) Details


Os.27078.1.S1_x_at

Description gb:AK067852.1
DB_XREF= gi:32977870
TID=Os.27078.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0660F12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013122B13, full insert sequence.
FL= gb:AK067852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g716308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71608Os.26710.1.S1_at2/111+41812198..41812863hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein
LOC_Os01g71650OsAffx.24006.1.S1_at11/111+41852572..41853264Glucan endo-1,3-beta-glucosidase, acidic isoform precursor, putative
LOC_Os01g71660OsAffx.31070.1.S1_x_at1/111+41854160..41856413transposon protein, putative, unclassified
LOC_Os01g71670Os.1385.1.S1_at10/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71670Os.1385.2.S1_x_at7/111+41860123..41862468Glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed
LOC_Os01g71680OsAffx.2458.1.S1_at11/111+41863826..41865169Glucan endo-1,3-beta-glucosidase GII precursor, putative
LOC_Os01g71690Os.42832.1.S1_at10/111+41866607..41872489recA protein, expressed
LOC_Os01g71690Os.25266.1.S1_at7/111+41866607..41872489recA protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27078.1.S1_x_at--3--8651Chr01:41845906..41845930 (25 bp)
TGGGACAATGGCACTGGATGAATAT
LOC_Os01g71630
Os.27078.1.S1_x_at--1052--451Chr01:41845944..41845968 (25 bp)
ATCTCTGTACAGTTGTTTTGGTGAA
LOC_Os01g71630
Os.27078.1.S1_x_at--1140--5651Chr01:41845969..41845993 (25 bp)
GACATCTGAGATTAAGCTGCTAAGA
LOC_Os01g71630
Os.27078.1.S1_x_at--407--3971Chr01:41846314..41846338 (25 bp)
CGGTCTTTTACATGTTTGATACTTT
LOC_Os01g71630
Os.27078.1.S1_x_at--879--6471Chr01:41846331..41846355 (25 bp)
GATACTTTGATGCATCGTTGAGACA
LOC_Os01g71630
Os.27078.1.S1_x_at--765--2611Chr01:41846392..41846416 (25 bp)
AACCGTACGTGATGCTCAAGTAATC
LOC_Os01g71630
Os.27078.1.S1_x_at--1159--6331Chr01:41846402..41846426 (25 bp)
GATGCTCAAGTAATCTTATCTGACA
LOC_Os01g71630
Os.27078.1.S1_x_at--208--9651Chr01:41846275..41846299 (25 bp)
TCAGTCTTTTGCATGATTCCTTGCG
LOC_Os01g71630
Os.27078.1.S1_x_at--904--10671Chr01:41846515..41846539 (25 bp)
TTCCTTCAGTCTTTTACATGTTTGA
NONE
Os.27078.1.S1_x_at--802--6471Chr01:41846538..41846562 (25 bp)
GATACTTGATGCATCGTTGAGACAG
NONE
Os.27078.1.S1_x_at--650--1211Chr01:41846561..41846585 (25 bp)
AGTTTTTTGTACCTGAATGAATCAT
NONE
Target Sequence 
TGGGACAATGGCACTGGATGAATATATCCACCAAAAAAATCTCTGTACAGTTGTTTTGGTGAAGACATCTGAGATTAAGC
TGCTAAGAGATGCTGGAATCGAAGAAATAAGTGCTAAGACACNTCTGAGTTTTCGCAACATCNAAGCNNAACCANTTGTG
CCAAAGANACNTCGGGAGGATGAGGATCTANANAANNGGGGNGGGGGGGGGGGGGAGGGCAGGTGGTGAATAGGATGAGG
AGAGGGCAGGTGTGAAGATAAGGTGGACAACTCACTGAACTTCAGTCTTTTGCATGATTCCTTGCGACGGCAGATTCCTT
CGGTCTTTTACATGTTTGATACTTTGATGCATCGTTGAGACAGTTTTTTTTGTACCTGAATCATGATGTTCATGTCACAA
CCGTACGTGATGCTCAAGTAATCTTATCTGACAATGTAGCTTAGCTAACTAAAACATATGAAGATAAAGGTGGACAACTC
ACTGAACTTCAGTCTTTTGCATGATTCCTTGCGACGGCAGATTCCTTCAGTCTTTTACATGTTTGATACTTGATGCATCG
TTGAGACAGTTTTTTGTACCTGAATGAATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27078.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis