Browse Element(s) Details


OsAffx.32010.2.S1_x_at

Description gb:NM_189741.1
DB_XREF= gi:34906565
GEN=P0660F12.12
TID=OsAffx.32010.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0660F12.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g716204/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g71590Os.6747.1.S1_a_at11/111+41797132..41805170expressed protein
LOC_Os01g71590Os.23761.1.S1_at1/111+41797132..41805170expressed protein
LOC_Os01g71599OsAffx.24004.1.S1_at10/111+41807380..41809240hypothetical protein
LOC_Os01g71608Os.26710.1.S1_at2/111+41812198..41812863hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_s_at11/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.3.S1_x_at5/111+41819578..41826524hypothetical protein
LOC_Os01g71620OsAffx.32010.2.S1_x_at4/111+41819578..41826524hypothetical protein
LOC_Os01g71620Os.49334.1.S1_at1/111+41819578..41826524hypothetical protein
LOC_Os01g71630OsAffx.21879.1.S1_at11/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_s_at11/111+41837041..41846521expressed protein
LOC_Os01g71630OsAffx.21879.1.S1_x_at10/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_x_at8/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.1.S1_at7/111+41837041..41846521expressed protein
LOC_Os01g71630Os.27078.2.S1_x_at5/111+41837041..41846521expressed protein
LOC_Os01g71640OsAffx.21878.2.S1_x_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.2.S1_at11/111+41851360..41852302hypothetical protein
LOC_Os01g71640OsAffx.21878.1.S1_x_at9/111+41851360..41852302hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32010.2.S1_x_at--536--5431Chr01:41821787..41821811 (25 bp)
GAACCTTTGGGTGAGCTCCGCAGAA
LOC_Os01g71620
OsAffx.32010.2.S1_x_at--482--5091NONE
GCACCGTATCTAGAGGATGACAGCC
NONE
OsAffx.32010.2.S1_x_at--399--451NONE
ATCTAGAGGATGACAGCCGCCGGCT
NONE
OsAffx.32010.2.S1_x_at--789--7971Chr01:41820602..41820626 (25 bp)
GGATCCAAGCAACAGTGGCGCACAT
LOC_Os01g71620
OsAffx.32010.2.S1_x_at--466--8391Chr01:41820586..41820610 (25 bp)
GGCGCACATCGCAAGCAGAGGAGAT
LOC_Os01g71620
OsAffx.32010.2.S1_x_at--534--4571Chr01:41820515..41820539 (25 bp)
GCGCGATGGATTTCGGCCACGGCAC
LOC_Os01g71620
OsAffx.32010.2.S1_x_at--299--4111NONE
CGACAACGACGGATGCTAGAGCCAA
NONE
OsAffx.32010.2.S1_x_at--1149--2531NONE
AACTCAAAGAGTTATAGTTGCGAGC
NONE
OsAffx.32010.2.S1_x_at--426--4611Chr01:41818404..41818428 (25 bp)
GCGAGCTAGATTTTGGCATTGTACT
NONE
OsAffx.32010.2.S1_x_at--91--7011Chr01:41818384..41818408 (25 bp)
GTACTGCTGATTTGCATGCTCTCTA
NONE
OsAffx.32010.2.S1_x_at--72--4991Chr01:41818371..41818395 (25 bp)
GCATGCTCTCTAATGCAATCAAGTA
NONE
Target Sequence
GAACCTTTGGGTGAGCTCCGCAGAATCAACAACCATAGCTACACGGAGTACGGTAGAATTCCTCGGTACGGTCATTCGGG
AAGTTCCCCCGAGGACGACTCCCATACAATTCCTGCGAGAGCTGGAGAAGCGTCTACGGGTAAAGCACCGTATCTAGAGG
ATGACAGCCGCCGGCTGCGGCGTCGCCTCGCTCGCCTGAGGTGTTGGGGCGGCAGTGAGAGGAAGGTCCAGCTTGGAGGA
GCTGAGGAGGGAGACGCGGTCACGGACCGGTGGCGGTGGCCTTGGATCCAAGCAACAGTGGCGCACATCGCAAGCAGAGG
AGATGTTGGAGCCAGGGTCGAGAGGGACGGCAGGGGCATTGCGGAGGTCGGCGCGATGGATTTCGGCCACGGCACGGCGA
CAACGACGGATGCTAGAGCCAATAACTCAAAGAGTTATAGTTGCGAGCTAGATTTTGGCATTGTACTGCTGATTTGCATG
CTCTCTAATGCAATCAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32010.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis