Browse Element(s) Details


Os.26710.1.S1_at

Description gb:AK111327.1
DB_XREF= gi:32996536
TID=Os.26710.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative non-phototropic hypocotyl 3 (P0013F10.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D11, full insert sequence.
FL= gb:AK111327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g081403/11non-phototropic hypocotyl protein, putative
LOC_Os01g715582/11hypothetical protein
LOC_Os01g716082/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08080NANA1+3910503..3913076expressed protein
LOC_Os01g08090Os.32668.1.S1_at11/111+3914720..3917234Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os01g08100NANA1+3918158..3919936Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g08110Os.551.1.S1_at11/111+3921183..3923358UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26710.1.S1_at--168--9573Chr01:3935539..3935563 (25 bp)
TCTTCAAGTGGAGCACGTTCTGGTT
LOC_Os01g08140
Os.26710.1.S1_at--299--1513Chr01:3935550..3935574 (25 bp)
AGCACGTTCTGGTTCGGCGGCATGA
LOC_Os01g08140
Os.26710.1.S1_at--1133--5571Chr01:3935690..3935714 (25 bp)
GAAATGGCGCAAGTCGATGTCATGA
LOC_Os01g08140
Os.26710.1.S1_at--629--9471Chr01:3935720..3935744 (25 bp)
TCTGAAATTCTGAAGCCAAAGCTGA
NONE
Os.26710.1.S1_at--115--2691Chr01:3935738..3935762 (25 bp)
AAGCTGATGGCTAAGTGGGTCGTTA
NONE
Os.26710.1.S1_at--637--4831Chr01:3935747..3935771 (25 bp)
GCTAAGTGGGTCGTTAATCTGTTTT
NONE
Os.26710.1.S1_at--687--7111Chr01:3935788..3935812 (25 bp)
GTCAGTTACCTTTCTGTCTGAACTA
NONE
Os.26710.1.S1_at--322--3891Chr01:3935801..3935825 (25 bp)
CTGTCTGAACTATTGTTTGTGGTGA
NONE
Os.26710.1.S1_at--248--6471Chr01:3935835..3935859 (25 bp)
GATAAATCTGCTCACTTGAGTGCAT
NONE
Os.26710.1.S1_at--746--1251Chr01:3935901..3935925 (25 bp)
AGATTTCTGGTTTGGTCGAGGACGA
NONE
Os.26710.1.S1_at--437--291Chr01:3935970..3935994 (25 bp)
ATAGTTGTACAACGCCAGTATGATC
NONE
Target Sequence 
TCTTCAAGTGGAGCACGTTCTGGTTCGGCGGCATGAGCGCCGACGTCGCGCGGGTGGAGGACTCCGAGAGCGGCATCGAG
CGGCGGACGCCGGCGAGCGGGAAGAAGGGCAGGGGCGGCGCCGCCGGCGCCGCCGCCGCGACGCCGACGCCGAAATGGCG
CAAGTCGATGTCATGAGAGGATCTGAAATTCTGAAGCCAAAGCTGATGGCTAAGTGGGTCGTTAATCTGTTTTACTACCT
TTAATTACAGTCAGTTACCTTTCTGTCTGAACTATTGTTTGTGGTGAAACCATTCAGATAAATCTGCTCACTTGAGTGCA
TAAATAAATCTGTGATGTTCTAAAAAGAGAGGGAAGCATATAAGATTTCTGGTTTGGTCGAGGACGAAATGGACTTAAGA
ATTTAGTTTCTCTTCATAAATAAATCAACAAATAGTTGTACAACGCCAGTATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis