Browse Element(s) Details


OsAffx.23159.1.S1_at

Description gb:NM_191614.1
DB_XREF= gi:34910311
GEN=P0013F10.15
TID=OsAffx.23159.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013F10.15 (P0013F10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g081807/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein
LOC_Os01g08190Os.23654.2.S1_x_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.23654.1.S1_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.10429.1.S1_at1/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08200Os.7173.1.S1_s_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
LOC_Os01g08200Os.7173.1.S1_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23159.1.S1_at--475--4091Chr01:3960162..3960186 (25 bp)
CGACGAGGATCTACGCCGGCCTGCG
LOC_Os01g08180
OsAffx.23159.1.S1_at--554--3331NONE
CACGACGAGCGTTTAGCCGGCGCCG
NONE
OsAffx.23159.1.S1_at--811--1591Chr01:3959365..3959389 (25 bp)
AGCTCCGATCAGCTGCAGGTGTCCT
LOC_Os01g08180
OsAffx.23159.1.S1_at--811--3471Chr01:3959350..3959374 (25 bp)
CAGGTGTCCTCCTACAGTGGAGCAA
LOC_Os01g08180
OsAffx.23159.1.S1_at--270--1331Chr01:3959324..3959348 (25 bp)
AGAGGCAGCAGTGGCTATCCAGCAT
LOC_Os01g08180
OsAffx.23159.1.S1_at--140--3471Chr01:3959316..3959340 (25 bp)
CAGTGGCTATCCAGCATCAGGAGCA
LOC_Os01g08180
OsAffx.23159.1.S1_at--251--6051Chr01:3959284..3959308 (25 bp)
GAGATATCACTCGAGCTGACACTCT
LOC_Os01g08180
OsAffx.23159.1.S1_at--350--1611Chr01:3959271..3959295 (25 bp)
AGCTGACACTCTCATTCACCTACAT
LOC_Os01g08180
OsAffx.23159.1.S1_at--978--5271Chr01:3959015..3959039 (25 bp)
GAATGTGTTCACCAAGAGCACGCAA
NONE
OsAffx.23159.1.S1_at--736--5871Chr01:3959000..3959024 (25 bp)
GAGCACGCAATATCGGAAAGTAATT
NONE
OsAffx.23159.1.S1_at--336--10811Chr01:3958976..3959000 (25 bp)
TTGTCAGCACGAACACTTTGTGTCA
NONE
Target Sequence 
CGACGAGGATCTACGCCGGCCTGCGCGCCGGCGCCGGGTACGCGCTGCCCAAGCACGCCGACCAGAACGACGTCCTCCGG
GCGCTCTGCGCCGAGGCCGGCTACCTCGTCGACGACGACGGCAACGTCTCGCGCCGCCACGACGAGCGTTTAGCCGGCGC
CGGCGCCGGCGGAGGCGGCAGCTCCGATCAGCTGCAGGTGTCCTCCTACAGTGGAGCAACAGAGGCAGCAGTGGCTATCC
AGCATCAGGAGCAGGAGCAAGAGATATCACTCGAGCTGACACTCTCATTCACCTACATNTANCTATTGGAAACTTGGAAT
GTGTTCACCAAGAGCACGCAATATCGGAAAGTAATTTGTCAGCACGAACACTTTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis