Browse Element(s) Details


Os.29819.2.S1_x_at

Description gb:NM_191611.1
DB_XREF= gi:34910305
GEN=P0013F10.12
TID=Os.29819.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013F10.12 (P0013F10.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0013F10.12 (P0013F10.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0816011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein
LOC_Os01g08190Os.23654.2.S1_x_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.23654.1.S1_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.10429.1.S1_at1/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29819.2.S1_x_at--414--8871Chr01:3950969..3950993 (25 bp)
TGATGAGGTGAAAAGCCATCTCCAG
LOC_Os01g08160
Os.29819.2.S1_x_at--520--2431Chr01:3950979..3951167 (25 bp)
AAAAGCCATCTCCAGAAGTACAGGT
LOC_Os01g08160
Os.29819.2.S1_x_at--348--471Chr01:3950986..3951174 (25 bp)
ATCTCCAGAAGTACAGGTTGCACAC
LOC_Os01g08160
Os.29819.2.S1_x_at--886--2111Chr01:3951162..3951186 (25 bp)
ACAGGTTGCACACAAGACGGCCGAT
LOC_Os01g08160
Os.29819.2.S1_x_at--429--6671Chr01:3951166..3951190 (25 bp)
GTTGCACACAAGACGGCCGATGCCG
LOC_Os01g08160
Os.29819.2.S1_x_at--983--8631Chr01:3951234..3951258 (25 bp)
TGGGAGGCATCTGGGTGCCGCCGGA
LOC_Os01g08160
Os.29819.2.S1_x_at--245--7291Chr01:3951248..3951272 (25 bp)
GTGCCGCCGGAGTACGCGACGCAGG
LOC_Os01g08160
Os.29819.2.S1_x_at--215--8491Chr01:3951333..3951357 (25 bp)
TGGCGGCGCAGGAGTACTACCACCA
LOC_Os01g08160
Os.29819.2.S1_x_at--187--3811Chr01:3951550..3951574 (25 bp)
CTCCGGAGCCGGAAGGGACATGTCC
LOC_Os01g08160
Os.29819.2.S1_x_at--660--3951Chr01:3951559..3951583 (25 bp)
CGGAAGGGACATGTCCGAGAGCATC
LOC_Os01g08160
Os.29819.2.S1_x_at--1121--5591Chr01:3951677..3951701 (25 bp)
GACAACGACGAGATCAACACCACCA
LOC_Os01g08160
Target Sequence 
TGATGAGGTGAAAAGCCATCTCCAGAAGTACAGGTTGCACACAAGACGGCCGATGCCGTCGCCGGCGCCGCCGACGGCAG
CGACGCCGCAGCTGGTGGTGCTGGGAGGCATCTGGGTGCCGCCGGAGTACGCGACGCAGGCGGCGGGGCCGGCCATCTAC
GGCGCGCACCCGGCGACGCAGCCGCACTACACGGCGGCGGTGGCGGCGCAGGAGTACTACCACCACCACCACCACCACCT
GCAGCACCACCCCGCCGCCGCCGCCCTGGTGCACCACCGCGCCGTAGCCCCGCCCCCGCCGCTGCCGCCTCAGCAGCAGC
TGGCCCCTCCCTACAGCGCCAAGTCGTCGGCGTCGGCGAGGCTCGGGTCCCCGGACTCCGACGGCCGTGGCAGCGGCGGC
GGCGGCGGCGCCGCCGCCTCCGGAGCCGGAAGGGACATGTCCGAGAGCATCGAGGAGGAAGGCGAGGGCGAGGAGCGGGA
GGACGACGACGACGACGACGAGATGGCGGCGACCAACAACGCCCACGCCGTCGACGGCGACGACGACAACGACGAGATCA
ACACCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29819.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis