Browse Element(s) Details


Os.554.1.S1_at

Description gb:AK102552.1
DB_XREF= gi:32987761
TID=Os.554.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0013F10.10 (P0013F10.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097C16, full insert sequence.
FL= gb:AK102552.1 gb:AK064369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0815011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08080NANA1+3910503..3913076expressed protein
LOC_Os01g08090Os.32668.1.S1_at11/111+3914720..3917234Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os01g08100NANA1+3918158..3919936Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g08110Os.551.1.S1_at11/111+3921183..3923358UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.554.1.S1_at--849--6031Chr01:3936502..3936526 (25 bp)
GAGATCACCGAATGCTCCGATGAGA
LOC_Os01g08150
Os.554.1.S1_at--144--7771Chr01:3936435..3936459 (25 bp)
GGTGCAGGAACAGCTTTGAGATCAA
LOC_Os01g08150
Os.554.1.S1_at--793--5351Chr01:3936392..3936416 (25 bp)
GAAGATCTGGTTCCCAAGGTCTGAC
LOC_Os01g08150
Os.554.1.S1_at--161--4111Chr01:3936266..3936290 (25 bp)
CGACAATGGCAGATACGGCTATGAA
LOC_Os01g08150
Os.554.1.S1_at--264--5051Chr01:3936222..3936246 (25 bp)
GCAGCAAGTTCCTCACCAGGTGCAA
LOC_Os01g08150
Os.554.1.S1_at--1160--8851Chr01:3936150..3936174 (25 bp)
TGATGCAGCACATTTCAACCTGTTT
LOC_Os01g08150
Os.554.1.S1_at--511--2631Chr01:3936134..3936158 (25 bp)
AACCTGTTTATTCTTCAAATCTGTG
LOC_Os01g08150
Os.554.1.S1_at--643--331Chr01:3936041..3936065 (25 bp)
ATACATAGCTTTGCAGAGTTCCTTC
LOC_Os01g08150
Os.554.1.S1_at--1105--6051Chr01:3936026..3936050 (25 bp)
GAGTTCCTTCTGCAACTAGTGAGAC
LOC_Os01g08150
Os.554.1.S1_at--721--5671Chr01:3936000..3936024 (25 bp)
GACATTTACTGTTCATGGTCACTAT
LOC_Os01g08150
Os.554.1.S1_at--562--6431Chr01:3935970..3935994 (25 bp)
GATCATACTGGCGTTGTACAACTAT
LOC_Os01g08150
Target Sequence 
GAGATCACCGAATGCTCCGATGAGATCGTCGAGGTCGGTGGCGATGGTGCTACTGAGCAGCAGGACAGGTGCAGGAACAG
CTTTGAGATCAAGGAGAGGGGAGAGGAGAAGAAGATCTGGTTCCCAAGGTCTGACAGCTCCAGGGGTTTCAGGTCTCTGC
CTTCCTCACCTTCCAAGATCCTTGGAATGAGAAGGGGTGTGGAGTGCATGAGCAGGAAGCCCAAGGTGGTCGGCGACGAC
AATGGCAGATACGGCTATGAAGATTCAGTGTCCACAAGCAGCAGCAAGTTCCTCACCAGGTGCAAGCAAGCCATCAAGAA
AGCAGTGAACAAATAAACAATTCTTTGCACCATGATGCAGCACATTTCAACCTGTTTATTCTTCAAATCTGTGTGTTTAA
ATTCGTGTCAAATTGCTAGTTTTGTTTTCTGTAGCTGAATAAGTTAGTACTCAAGTGAGGCATACATAGCTTTGCAGAGT
TCCTTCTGCAACTAGTGAGACAGACATTTACTGTTCATGGTCACTATTATGTGATCATACTGGCGTTGTACAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis