Browse Element(s) Details


Os.551.1.S1_at

Description gb:AK064351.1
DB_XREF= gi:32974369
TID=Os.551.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucosyl transferase (P0013F10.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A07, full insert sequence.
FL= gb:AK064351.1 gb:AK102335.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0811011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08050NANA1+3898186..3898638hypothetical protein
LOC_Os01g08060NANA1+3900292..3901712transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.41934.1.A1_x_at10/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08070Os.14491.2.S1_x_at2/111+3902051..3904231transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g08080NANA1+3910503..3913076expressed protein
LOC_Os01g08090Os.32668.1.S1_at11/111+3914720..3917234Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative, expressed
LOC_Os01g08100NANA1+3918158..3919936Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os01g08110Os.551.1.S1_at11/111+3921183..3923358UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g08120OsAffx.10960.1.S1_at11/111+3924252..3926249pentatricopeptide, putative, expressed
LOC_Os01g08130NANA1+3929149..3930154NPH3 family protein, expressed
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.551.1.S1_at--1108--6151Chr01:3922830..3922854 (25 bp)
GAGGTTCTTCCTATGATAACATAAG
LOC_Os01g08110
Os.551.1.S1_at--647--7511Chr01:3922945..3922969 (25 bp)
GTGGAGGACCTATCATACTTATATC
LOC_Os01g08110
Os.551.1.S1_at--239--2511Chr01:3923007..3923031 (25 bp)
AACTATGGATTTGGCCTGAATTTCA
LOC_Os01g08110
Os.551.1.S1_at--773--4471Chr01:3923020..3923044 (25 bp)
GCCTGAATTTCATCCCTCTAACTAT
LOC_Os01g08110
Os.551.1.S1_at--551--3451Chr01:3923069..3923093 (25 bp)
CAGTATGTTGTGTGGTATGATTCTA
LOC_Os01g08110
Os.551.1.S1_at--495--71Chr01:3923118..3923142 (25 bp)
ATTGCATCAGTTGCTCAGTTTCTCA
LOC_Os01g08110
Os.551.1.S1_at--516--4831Chr01:3923130..3923154 (25 bp)
GCTCAGTTTCTCAGCAGAGTTGATA
LOC_Os01g08110
Os.551.1.S1_at--911--4171Chr01:3923203..3923227 (25 bp)
CCCTAGGCCAAAATGCTCTCAAAGT
LOC_Os01g08110
Os.551.1.S1_at--514--9091Chr01:3923216..3923240 (25 bp)
TGCTCTCAAAGTCTAATCTCCAAGT
LOC_Os01g08110
Os.551.1.S1_at--892--9551Chr01:3923264..3923288 (25 bp)
TCTTACGAGCATAGAGGACTGGTGT
LOC_Os01g08110
Os.551.1.S1_at--670--9891Chr01:3923305..3923329 (25 bp)
TACTTTGCCAATTATATACTTCTTT
LOC_Os01g08110
Target Sequence 
GAGGTTCTTCCTATGATAACATAAGCCTATTGATTCAAGAAATGGGAAACAAGCAAAATGCATCTGGTTGATACAGATGG
GAATAAGCATTTTTTTTAATCATGATGAGCATGAAGTGGAGGACCTATCATACTTATATCTTCATAAAGTATGGAAGATG
TCCACATTTGGTTATTCAACTATGGATTTGGCCTGAATTTCATCCCTCTAACTATAAAGGATTGTGTTTTACAAATGACC
AGTATGTTGTGTGGTATGATTCTATGGTTTAAAATAAACCTGGTNTAAATTGCATCAGTTGCTCAGTTTCTCAGCAGAGT
TGATACNTTTTAGAGAAGGAGTAAAAATTAAATAAAATAGCGTTTGTGCAACNCCCTAGGCCAAAATGCTCTCAAAGTCT
AATCTCCAAGTAATTTGGGTGTACGACTGGTACNTTCTTACGAGCATAGAGGACTGGTGTAAATTTATGAAAACAATACT
TTGCCAATTATATACTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis