Browse Element(s) Details


OsAffx.4509.1.S1_x_at

Description tigr:9633.m03119
TID=OsAffx.4509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3377011/11hypothetical protein
LOC_Os01g081502/11expressed protein
LOC_Os02g461101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33740Os.46012.2.S1_x_at6/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.46012.3.S1_x_at5/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.27088.1.A1_x_at1/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33740Os.54691.1.S1_x_at1/115+19793618..19794377retrotransposon protein, putative, unclassified
LOC_Os05g33750Os.47130.4.A1_x_at3/115+19794987..19799846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33750Os.27455.2.S1_at1/115+19794987..19799846retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33760OsAffx.14946.1.S1_at11/115+19811318..19816681pentatricopeptide, putative, expressed
LOC_Os05g33770OsAffx.4509.1.S1_s_at11/115+19817556..19817954hypothetical protein
LOC_Os05g33770OsAffx.4509.1.S1_x_at11/115+19817556..19817954hypothetical protein
LOC_Os05g33780NANA5+19819409..19819771hypothetical protein
LOC_Os05g33790OsAffx.19542.3.S1_x_at7/115+19827393..19831614retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g33800OsAffx.4343.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33800OsAffx.15708.1.S1_at1/115+19834500..19835856retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g33810Os.19407.1.S1_at11/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.45957.3.S1_x_at3/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.49445.1.S1_at1/115+19840016..19849297SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4509.1.S1_x_at--741--7531Chr05:19817652..19817676 (25 bp)
GTGGCGGCGCGACTGTTGGTGCGGT
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--960--8391Chr05:19817657..19817681 (25 bp)
GGCGCGACTGTTGGTGCGGTGGAGA
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--710--9131Chr05:19817671..19817695 (25 bp)
TGCGGTGGAGATTGATTGGGTGGTT
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--154--6631Chr05:19817693..19817717 (25 bp)
GTTGTGGGGTGCAGGCGATGCCGGC
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--321--3933Chr05:19817714..19817738 (25 bp)
CGGCGAAGGATCTGAACGAGATGTT
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--108--8992Chr05:19817726..19817750 (25 bp)
TGAACGAGATGTTCCCGGTGGCCGA
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--813--7891Chr05:19817782..19817806 (25 bp)
GGTTCGTGAACCTGCTGTGCAAGCA
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--198--5431Chr05:19817789..19817813 (25 bp)
GAACCTGCTGTGCAAGCAGCTTGAC
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--194--2731Chr05:19817802..19817826 (25 bp)
AAGCAGCTTGACCACCTCGGCAACG
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--411--9931Chr05:19817862..19817886 (25 bp)
TACGGCAACGTGCTCTACCTCCATG
LOC_Os05g33770
OsAffx.4509.1.S1_x_at--667--7311Chr05:19817871..19817895 (25 bp)
GTGCTCTACCTCCATGCCGACACTG
LOC_Os05g33770
Target Sequence 
GTGGCGGCGCGACTGTTGGTGCGGTGGAGATTGATTGGGTGGTTGTGGGGTGCAGGCGATGCCGGCGAAGGATCTGAACG
AGATGTTCCCGGTGGCCGAAGCGGAGGCGGCGCCGCCGCGAACCCGCGGGGGTTCGTGAACCTGCTGTGCAAGCAGCTTG
ACCACCTCGGCAACGCCAGGTTCGACCCGGCGCTGTTCCGCGTCGACGCCTACGGCAACGTGCTCTACCTCCATGCCGAC
ACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4509.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis