Browse Element(s) Details


OsAffx.4343.1.S1_at

Description tigr:9633.m01320
TID=OsAffx.4343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1500011/11hypothetical protein
LOC_Os05g338001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein
LOC_Os05g14960OsAffx.26898.1.S1_at11/115+8467470..8468034hypothetical protein
LOC_Os05g14970OsAffx.4341.1.S1_at11/115+8471366..8473983hypothetical protein
LOC_Os05g14980OsAffx.4342.1.S1_at6/115+8476843..8480270hypothetical protein
LOC_Os05g14990NANA5+8486485..8486691hypothetical protein
LOC_Os05g15000OsAffx.4343.1.S1_at11/115+8488326..8488820hypothetical protein
LOC_Os05g15020OsAffx.14702.1.S1_at11/115+8493775..8494323hypothetical protein
LOC_Os05g15030OsAffx.8338.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.22240.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.10020.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15040Os.51968.3.S1_at11/115+8505704..8514489NB-ARC domain containing protein, expressed
LOC_Os05g15040Os.51968.1.S1_a_at11/115+8505704..8514489NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4343.1.S1_at--23--2334Chr11:7286939..7287196 (25 bp)
ATATTGTAATTATCCCATTGTGTGA
NONE
OsAffx.4343.1.S1_at--537--7453Chr05:8488394..8488418 (25 bp)
GTGTGATGAGGACCTACCTAGCTCC
LOC_Os05g15000
OsAffx.4343.1.S1_at--954--9993Chr05:8488412..8488436 (25 bp)
TAGCTCCTCACATTCTTCTACAACT
LOC_Os05g15000
OsAffx.4343.1.S1_at--72--6372Chr05:8488446..8488470 (25 bp)
GATCCAACAATCTCCAATGCGTATA
LOC_Os05g15000
OsAffx.4343.1.S1_at--494--9771Chr05:8488469..8488493 (25 bp)
TAAGGGACCTATCACACGAGCACGT
LOC_Os05g15000
OsAffx.4343.1.S1_at--930--1851Chr05:8488484..8488508 (25 bp)
ACGAGCACGTGCACGGGAAATTCAA
LOC_Os05g15000
OsAffx.4343.1.S1_at--307--7374Chr05:8488552..8488576 (25 bp)
GTGAGCATAATTTACTACCTAATAG
LOC_Os05g15000
OsAffx.4343.1.S1_at--256--3112Chr05:8488572..8488596 (25 bp)
AATAGTTGCTCTTTTCTTGTGCTCA
LOC_Os05g15000
OsAffx.4343.1.S1_at--241--5371Chr05:8488638..8488662 (25 bp)
GAAGAGCTCTCTGATCCAATATTTT
LOC_Os05g15000
OsAffx.4343.1.S1_at--682--5111Chr05:8488671..8488695 (25 bp)
GCACAAACCCATACCAATATTACCG
LOC_Os05g15000
OsAffx.4343.1.S1_at--866--951Chr05:8488757..8488781 (25 bp)
AGGAGAGTTGCTGTACCGGAAAACT
LOC_Os05g15000
Target Sequence 
ATATTGTAATTATCCCATTGTGTGATGAGGACCTACCTAGCTCCTCACATTCTTCTACAACTGCCACTCCCGATCCAACA
ATCTCCAATGCGTATAAGGGACCTATCACACGAGCACGTGCACGGGAAATTCAAAATAAGGTGAATATGTTCCTAAGTAC
TTTGAATTATGATATTAGTGAGCATAATTTACTACCTAATAGTTGCTCTTTTCTTGTGCTCAGATTTGAAGGAATGATAT
CATTGGAGACCGAAAGACAAGAGGAAGAGCTCTCTGATCCAATATTTTGTTTAATGGCACAAACCCATACCAATATTACC
GAGAGGGAGGTGTGGAGGGATGGCACCAGCGACAAGATAGAAAAAATCAGCACCAACAACAAAGGAGAGTTGCTGTACCG
GAAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis