Browse Element(s) Details


Os.51968.1.S1_a_at

Description gb:AK100136.1
DB_XREF= gi:32985345
TID=Os.51968.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51968 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010H12, full insert sequence.
FL= gb:AK100136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1504011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14990NANA5+8486485..8486691hypothetical protein
LOC_Os05g15000OsAffx.4343.1.S1_at11/115+8488326..8488820hypothetical protein
LOC_Os05g15020OsAffx.14702.1.S1_at11/115+8493775..8494323hypothetical protein
LOC_Os05g15030OsAffx.8338.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.22240.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.10020.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15040Os.51968.3.S1_at11/115+8505704..8514489NB-ARC domain containing protein, expressed
LOC_Os05g15040Os.51968.1.S1_a_at11/115+8505704..8514489NB-ARC domain containing protein, expressed
LOC_Os05g15050OsAffx.14703.1.S1_at10/115+8520772..8523589hypothetical protein
LOC_Os05g15050OsAffx.23445.1.S1_x_at1/115+8520772..8523589hypothetical protein
LOC_Os05g15050OsAffx.19614.1.A1_at1/115+8520772..8523589hypothetical protein
LOC_Os05g15060NANA5+8530626..8533080retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51968.1.S1_a_at--401--7531Chr05:8506362..8506386 (25 bp)
GTGGAATCTCTCATGTTACAGTGCA
LOC_Os05g15040
Os.51968.1.S1_a_at--224--1011Chr05:8506338..8506362 (25 bp)
AGGATTGCACCTTCTGCCTATATAC
LOC_Os05g15040
Os.51968.1.S1_a_at--1031--4431Chr05:8506323..8506347 (25 bp)
GCCTATATACCATCTTCAGTTTCTA
LOC_Os05g15040
Os.51968.1.S1_a_at--337--3171Chr05:8506175..8506199 (25 bp)
AATTGTGTATCCCATGGTTGTCGCT
LOC_Os05g15040
Os.51968.1.S1_a_at--113--8171Chr05:8506140..8506164 (25 bp)
GGAAGCCTAACCAGTTTGCAGTCGG
LOC_Os05g15040
Os.51968.1.S1_a_at--391--9631Chr05:8506097..8506121 (25 bp)
TCATGTGCTGGAGCCGTTGGACACA
LOC_Os05g15040
Os.51968.1.S1_a_at--241--4231Chr05:8506084..8506108 (25 bp)
CCGTTGGACACACCCGATGATATCA
LOC_Os05g15040
Os.51968.1.S1_a_at--411--8631Chr05:8506013..8506037 (25 bp)
TGTGGACAGGGTGCTCAATACGGTT
LOC_Os05g15040
Os.51968.1.S1_a_at--472--6611Chr05:8505991..8506015 (25 bp)
GTTGGCAGGCTGGATGGCAATACTT
LOC_Os05g15040
Os.51968.1.S1_a_at--853--5191Chr05:8505975..8505999 (25 bp)
GCAATACTTGCTTGGCCTATGGTGA
LOC_Os05g15040
Os.51968.1.S1_a_at--776--10631Chr05:8505938..8505962 (25 bp)
TTCGCCAGCCGGTTAAGAAAGCAGA
LOC_Os05g15040
Target Sequence 
GTGGAATCTCTCATGTTACAGTGCAGGATTGCACCTTCTGCCTATATACCATCTTCAGTTTCTAGCGGTGGTGAAATTGT
GTATCCCATGGTTGTCGCTGCGCATCCCTGGAAGCCTAACCAGTTTGCAGTCGGCATGAGCGATGGTGCAGTTCATGTGC
TGGAGCCGTTGGACACACCCGATGATATCATCAGCAATTCAATTCAGCAGGGGCGTTTTGGTGACAGCGGATGATGTGTG
GACAGGGTGCTCAATACGGTTGGCAGGCTGGATGGCAATACTTGCTTGGCCTATGGTGATAGATTATTTTTTTCGCCAGC
CGGTTAAGAAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51968.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis