Browse Element(s) Details


OsAffx.14703.1.S1_at

Description tigr:9633.m01327
TID=OsAffx.14703.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1505010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15030OsAffx.8338.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.22240.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.10020.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15040Os.51968.3.S1_at11/115+8505704..8514489NB-ARC domain containing protein, expressed
LOC_Os05g15040Os.51968.1.S1_a_at11/115+8505704..8514489NB-ARC domain containing protein, expressed
LOC_Os05g15050OsAffx.14703.1.S1_at10/115+8520772..8523589hypothetical protein
LOC_Os05g15050OsAffx.23445.1.S1_x_at1/115+8520772..8523589hypothetical protein
LOC_Os05g15050OsAffx.19614.1.A1_at1/115+8520772..8523589hypothetical protein
LOC_Os05g15060NANA5+8530626..8533080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15070NANA5+8540545..8541066hypothetical protein
LOC_Os05g15080OsAffx.26902.1.S1_at11/115+8542996..8543961hypothetical protein
LOC_Os05g15090NANA5+8545153..8549384retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14703.1.S1_at--251--8591Chr05:8523272..8523296 (25 bp)
TGGTAGCTTGATTCCTCTATTGTGG
LOC_Os05g15050
OsAffx.14703.1.S1_at--166--1351Chr05:8523027..8523051 (25 bp)
AGAGTTCAGGACATATCGTTTCGCT
LOC_Os05g15050
OsAffx.14703.1.S1_at--666--9391NONE
TCGTTTCGCTGAGAACATGCACTGC
NONE
OsAffx.14703.1.S1_at--714--2471Chr05:8520972..8520993 (22 bp)
AACATGCACTGCAACGCCAACAAGT
LOC_Os05g15050
OsAffx.14703.1.S1_at--316--7191Chr05:8520949..8520973 (25 bp)
GTCGGGCGTGGCAGACTACACCTGC
LOC_Os05g15050
OsAffx.14703.1.S1_at--517--7111Chr05:8520890..8520914 (25 bp)
GTCAGCGCCAGATTGATCTTGTCAA
LOC_Os05g15050
OsAffx.14703.1.S1_at--1080--8731Chr05:8520871..8520895 (25 bp)
TGTCAACGACAACGTCTGCCATGAG
LOC_Os05g15050
OsAffx.14703.1.S1_at--949--9191Chr05:8520855..8520879 (25 bp)
TGCCATGAGGCACCCTTTGACATGC
LOC_Os05g15050
OsAffx.14703.1.S1_at--622--10251Chr05:8520840..8520864 (25 bp)
TTTGACATGCCACGCGTGACCAATG
LOC_Os05g15050
OsAffx.14703.1.S1_at--3--5871Chr05:8520823..8520847 (25 bp)
GACCAATGGCATGGCTGTTCAGATT
LOC_Os05g15050
OsAffx.14703.1.S1_at--236--6751Chr05:8520807..8520831 (25 bp)
GTTCAGATTGGCCACACCGATTACA
LOC_Os05g15050
Target Sequence 
TGGTAGCTTGATTCCTCTATTGTGGGATGGGGAGTTTCAGAGTAGGAAATGGAGATCAAATATTCAGACATGCAGAGAAG
TTCAGATAAGCAGAGAAGAAGCAGAGTTCAGGACATATCGTTTCGCTGAGAACATGCACTGCAACGCCAACAAGTCGGGC
GTGGCAGACTACACCTGCCACGCCAAGGAGCTAGGCGTGGCAGAAGTGCCACGTCAGCGCCAGATTGATCTTGTCAACGA
CAACGTCTGCCATGAGGCACCCTTTGACATGCCACGCGTGACCAATGGCATGGCTGTTCAGATTGGCCACACCGATTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis