Browse Element(s) Details


OsAffx.4342.1.S1_at

Description tigr:9633.m01318
TID=OsAffx.4342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g149806/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14920OsAffx.14701.1.S1_at11/115+8451292..8451924hypothetical protein
LOC_Os05g14930OsAffx.26896.1.S1_at11/115+8454704..8457403expressed protein
LOC_Os05g14940Os.7726.1.S1_at4/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14940OsAffx.26780.1.S1_at1/115+8458227..8462086hAT family dimerisation domain containing protein, expressed
LOC_Os05g14950OsAffx.26897.1.S1_at11/115+8461716..8463394hypothetical protein
LOC_Os05g14960OsAffx.26898.1.S1_at11/115+8467470..8468034hypothetical protein
LOC_Os05g14970OsAffx.4341.1.S1_at11/115+8471366..8473983hypothetical protein
LOC_Os05g14980OsAffx.4342.1.S1_at6/115+8476843..8480270hypothetical protein
LOC_Os05g14990NANA5+8486485..8486691hypothetical protein
LOC_Os05g15000OsAffx.4343.1.S1_at11/115+8488326..8488820hypothetical protein
LOC_Os05g15020OsAffx.14702.1.S1_at11/115+8493775..8494323hypothetical protein
LOC_Os05g15030OsAffx.8338.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.22240.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15030OsAffx.10020.1.S1_x_at1/115+8496454..8501561retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4342.1.S1_at--654--1531Chr05:8476898..8476922 (25 bp)
AGCATGTCGATTTCCGGTACCCGGC
LOC_Os05g14980
OsAffx.4342.1.S1_at--367--8351Chr05:8476920..8476944 (25 bp)
GGCGGCCATGTCAATCGAGGAAGTC
LOC_Os05g14980
OsAffx.4342.1.S1_at--674--4051Chr05:8476935..8476959 (25 bp)
CGAGGAAGTCTGTGATCCCGACGAG
LOC_Os05g14980
OsAffx.4342.1.S1_at--413--711Chr05:8477299..8477323 (25 bp)
ATGTTCTTATGGTCAGGAGTTCCGA
LOC_Os05g14980
OsAffx.4342.1.S1_at--386--3471Chr05:8477325..8477349 (25 bp)
CAGGGATACCATGCTGTTGATCAGG
LOC_Os05g14980
OsAffx.4342.1.S1_at--826--8811Chr05:8477339..8477363 (25 bp)
TGTTGATCAGGAAGGCCAGCCGATG
LOC_Os05g14980
OsAffx.4342.1.S1_at--303--8511NONE
TGGCAATTAGACCTCCCAACGGATA
NONE
OsAffx.4342.1.S1_at--523--2571NONE
AACGGATAACGCCTCCCAGGATGTG
NONE
OsAffx.4342.1.S1_at--700--3791NONE
CTCCCAGGATGTGCCCTTTTATAGA
NONE
OsAffx.4342.1.S1_at--1000--10411NONE
TTATAGATATAGCACCCCATGGTAC
NONE
OsAffx.4342.1.S1_at--572--2711NONE
AAGCACACGAGGTCTGCCATTGTTT
NONE
Target Sequence 
AGCATGTCGATTTCCGGTACCCGGCGGCCATGTCAATCGAGGAAGTCTGTGATCCCGACGAGGAACGCGTCGTCGCCGTG
TTCCACGATTGCCTCGCCGCGCACGGCCTGCTCCTGGACAACCACGATGACTACCATATTATGCTAAAGGAGTTCTGCTA
TGTTCTTATGGTCAGGAGTTCCGAACAGGGATACCATGCTGTTGATCAGGAAGGCCAGCCGATGTACATCAAGAAGCTTG
GCAAGATCAATCGAAACAAGCTGATGCAGATCACCACAGTGGACAGTTACAACTTACATCAATTAGCATGTTGTAGAGAT
TTAATTGCAGGTTGGCAATTAGACCTCCCAACGGATAACGCCTCCCAGGATGTGCCCTTTTATAGATATAGCACCCCATG
GTACGGGGAGGACAAGCACACGAGGTCTGCCATTGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis