Browse Element(s) Details


OsAffx.26780.1.S1_at

Description tigr:9633.m00716
TID=OsAffx.26780.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g079909/11hypothetical protein
LOC_Os05g149401/11hAT family dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed
LOC_Os05g08020NANA5+4314883..4316263retrotransposon protein, putative, unclassified
LOC_Os05g08030NANA5+4323743..4324908transposon protein, putative, unclassified
LOC_Os05g08040OsAffx.31777.1.S1_at2/115+4326399..4328886retrotransposon protein, putative, unclassified
LOC_Os05g08040OsAffx.25156.1.S1_x_at2/115+4326399..4328886retrotransposon protein, putative, unclassified
LOC_Os05g08040OsAffx.31777.3.S1_at1/115+4326399..4328886retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26780.1.S1_at--859--311Chr05:4301804..4301828 (25 bp)
ATACGGCGGGCAAGCGCAGGGCGAC
LOC_Os05g07990
OsAffx.26780.1.S1_at--1149--8631Chr05:4301774..4301798 (25 bp)
TGGGCGCAGACGTGCGGAGGTCGCA
LOC_Os05g07990
OsAffx.26780.1.S1_at--106--3971Chr05:4301760..4301784 (25 bp)
CGGAGGTCGCATGGCTATCGCTGCC
LOC_Os05g07990
OsAffx.26780.1.S1_at--676--8391Chr05:4301739..4301759 (21 bp)
GGCGCTCTCCTTCTATATCTGAGCG
LOC_Os05g07990
OsAffx.26780.1.S1_at--577--3811NONE
CTCCTTCTATATCTGAGCGTAGCGT
NONE
OsAffx.26780.1.S1_at--666--10571NONE
TTCTATATCTGAGCGTAGCGTTTTT
NONE
OsAffx.26780.1.S1_at--562--5851Chr05:4300781..4300805 (25 bp)
GAGCGTAGCGTTTTTTAGTTCATCT
LOC_Os05g07990
OsAffx.26780.1.S1_at--264--4651Chr05:4300779..4300803 (25 bp)
GCGTAGCGTTTTTTAGTTCATCTGT
LOC_Os05g07990
OsAffx.26780.1.S1_at--1083--4631Chr05:4300774..4300798 (25 bp)
GCGTTTTTTAGTTCATCTGTTGCTA
LOC_Os05g07990
OsAffx.26780.1.S1_at--964--6731Chr05:4300764..4300788 (25 bp)
GTTCATCTGTTGCTAAGTTAAGACC
LOC_Os05g07990
OsAffx.26780.1.S1_at--709--3552Chr05:4300761..4300785 (25 bp)
CATCTGTTGCTAAGTTAAGACCTTT
LOC_Os05g07990
Target Sequence 
ATACGGCGGGCAAGCGCAGGGCGACGGTGGTGGGCGCAGACGTGCGGAGGTCGCATGGCTATCGCTGCCGGCGCTCTCCT
TCTATATCTGAGCGTAGCGTTTTTTAGTTCATCTGTTGCTAAGTTAAGACCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26780.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis