Browse Element(s) Details


OsAffx.29502.2.S1_x_at

Description tigr:9636.m03420
TID=OsAffx.29502.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3410011/11hypothetical protein
LOC_Os05g079304/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34070Os.15551.1.S1_at10/118+21222562..21227896DCN1-like protein 4, putative, expressed
LOC_Os08g34080Os.53479.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.31069.2.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34080OsAffx.17106.1.S1_x_at1/118+21232212..21234704retrotransposon protein, putative, unclassified
LOC_Os08g34090OsAffx.20387.1.S1_x_at2/118+21235631..21241630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34100OsAffx.29502.2.S1_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34100OsAffx.29502.2.S1_x_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34110NANA8+21255076..21259042retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34120Os.24101.1.A1_at8/118+21260558..21262140expressed protein
LOC_Os08g34130Os.56955.1.S1_at11/118+21264868..21266603Mitochondrial glycoprotein, expressed
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29502.2.S1_x_at--1046--1991Chr08:21249014..21249038 (25 bp)
ACTACGGACACATCTTTTACACCTG
LOC_Os08g34100
OsAffx.29502.2.S1_x_at--653--4551Chr08:21248917..21249014 (25 bp)
GCCCAAGTCACCAGCGGGATGGTAT
LOC_Os08g34100
OsAffx.29502.2.S1_x_at--538--10271Chr08:21248832..21248856 (25 bp)
TTTGCAAGCTTGCTCTGGATCGAGA
LOC_Os08g34100
OsAffx.29502.2.S1_x_at--145--952Chr05:4274714..4275027 (25 bp)
AGGACAAGCAGCTACTAACTGAATC
LOC_Os05g07930
OsAffx.29502.2.S1_x_at--812--2712Chr05:4274719..4275032 (25 bp)
AAGCAGCTACTAACTGAATCCCAGA
LOC_Os05g07930
OsAffx.29502.2.S1_x_at--644--1512Chr05:4274720..4275033 (25 bp)
AGCAGCTACTAACTGAATCCCAGAA
LOC_Os05g07930
OsAffx.29502.2.S1_x_at--661--3852Chr05:4275021..4275044 (24 bp)
CTGAATCCCAGAAAAATGAGCTAAT
LOC_Os05g07930
OsAffx.29502.2.S1_x_at--156--3011Chr08:21248401..21248425 (25 bp)
AATGAGCTAATTGAATCCCATCACA
LOC_Os08g34100
OsAffx.29502.2.S1_x_at--547--5911Chr08:21248398..21248422 (25 bp)
GAGCTAATTGAATCCCATCACAATT
LOC_Os08g34100
OsAffx.29502.2.S1_x_at--912--10731Chr08:21248391..21248415 (25 bp)
TTGAATCCCATCACAATTCTAAGAT
LOC_Os08g34100
OsAffx.29502.2.S1_x_at--645--531Chr08:21248387..21248411 (25 bp)
ATCCCATCACAATTCTAAGATTACT
LOC_Os08g34100
Target Sequence 
ACTACGGACACATCTTTTACACCTGCCCAAGTCACCAGCGGGATGGTATTGGATGTGATTTTTGGTATTGGGAGGAATAT
TATGAGCAATATTTGATTAAGGGAGGGTATTTGCAAGCTTGCTCTGGATCGAGAGGTAAAAGGCAGGTGATAGATTTGCA
TGGTGAAGGTGAAGGTGAAGGTGAAGGAGTTGGAGGAAGGCAGGTTGCAGAACAAATTGAGGACAAGCAGCTACTAACTG
AATCCCAGAAAAATGAGCTAATTGAATCCCATCACAATTCTAAGATTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29502.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis