Browse Element(s) Details


Os.13950.1.S1_at

Description gb:AK102539.1
DB_XREF= gi:32987748
TID=Os.13950.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.13950 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033096J21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033096J21, full insert sequence.
FL= gb:AK060959.1 gb:AK102539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3414011/11Vesicle transport v-SNARE protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34100OsAffx.29502.2.S1_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34100OsAffx.29502.2.S1_x_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34110NANA8+21255076..21259042retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34120Os.24101.1.A1_at8/118+21260558..21262140expressed protein
LOC_Os08g34130Os.56955.1.S1_at11/118+21264868..21266603Mitochondrial glycoprotein, expressed
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed
LOC_Os08g34150Os.18335.2.S1_x_at11/118+21274565..21275620Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34180OsAffx.17325.1.S1_at11/118+21292005..21296827hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006944biological_processmembrane fusion
GO:0016021cellular_componentintegral to membrane
GO:0000149molecular_functionSNARE binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13950.1.S1_at--1140--2171Chr08:21268726..21268747 (22 bp)
ACACAGGAATTCTATCGCCTCCGAT
LOC_Os08g34140
Os.13950.1.S1_at--899--5711Chr08:21268615..21268639 (25 bp)
GACTCTGATCAAGCTCTGCTCAAAG
LOC_Os08g34140
Os.13950.1.S1_at--1043--1571Chr08:21267718..21267742 (25 bp)
AGCTCAAGCTACATTAGGCACACTT
LOC_Os08g34140
Os.13950.1.S1_at--285--9791Chr08:21267653..21267677 (25 bp)
TAAGCAACGTTAGCAGTCGGCTCCC
LOC_Os08g34140
Os.13950.1.S1_at--390--7191Chr08:21267544..21267662 (25 bp)
GTCGGCTCCCTACGATTAATCAAAT
LOC_Os08g34140
Os.13950.1.S1_at--1003--831Chr08:21267491..21267515 (25 bp)
ATGGACACCATTATTCTATCCCTGG
LOC_Os08g34140
Os.13950.1.S1_at--701--6891Chr08:21267368..21267392 (25 bp)
GTATACATGCTTGCCGTGTTTGTAC
LOC_Os08g34140
Os.13950.1.S1_at--296--7431Chr08:21267353..21267377 (25 bp)
GTGTTTGTACAATATCGCCCCATGT
LOC_Os08g34140
Os.13950.1.S1_at--187--4531Chr08:21267337..21267361 (25 bp)
GCCCCATGTTATATCTTACCTGCTG
LOC_Os08g34140
Os.13950.1.S1_at--266--9471Chr08:21267290..21267314 (25 bp)
TCTGATTGAGCTACTTCAACCCCAT
LOC_Os08g34140
Os.13950.1.S1_at--1033--2611Chr08:21267273..21267297 (25 bp)
AACCCCATCTGTACATGTGAGCCGT
LOC_Os08g34140
Target Sequence 
ACACAGGAATTCTATCGCCTCCGATCAAGCCTTAGAGCAAAGCAACAACATGCTTCTCTTCTTGACTTGAGAGATTTTGA
CAGAGCGAAGTTTGATGTTGAAGAGGGTGCTGACTCTGATCAAGCTCTGCTCAAAGAACAAGCTGCGATCAGCAGGAGTA
CTGGGCAGATGGATACCGTGATATCACAAGCTCAAGCTACATTAGGCACACTTATGTTGCAACGATCAACATTTGGTGGT
ATTACTACGAAGATAAGCAACGTTAGCAGTCGGCTCCCTACGATTAATCAAATTCTTTCATCCATCAAAAGAAAGAAATC
GATGGACACCATTATTCTATCCCTGGTTGCATCTGTTTGTGCATTTCTTATTTTTATCTATTGGATGTCAAAGTAATCTT
GCCAAATAAAGGCGTTATAGTGTTGTATGTTTGGAAAAGTAGTAGTATACATGCTTGCCGTGTTTGTACAATATCGCCCC
ATGTTATATCTTACCTGCTGTTCTAGCTACATTAACTATCATTCTGATTGAGCTACTTCAACCCCATCTGTACATGTGAG
CCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis