Browse Element(s) Details


Os.24101.1.A1_at

Description gb:CA761215
DB_XREF= gi:25805254
DB_XREF=BR060003B10G11.ab1
CLONE=BR060003B10G11.ab1
TID=Os.24101.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24101 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50809 (A.thaliana) T50809 hypothetical protein T30N20_270 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g341208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34090OsAffx.20387.1.S1_x_at2/118+21235631..21241630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34100OsAffx.29502.2.S1_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34100OsAffx.29502.2.S1_x_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34110NANA8+21255076..21259042retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34120Os.24101.1.A1_at8/118+21260558..21262140expressed protein
LOC_Os08g34130Os.56955.1.S1_at11/118+21264868..21266603Mitochondrial glycoprotein, expressed
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed
LOC_Os08g34150Os.18335.2.S1_x_at11/118+21274565..21275620Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24101.1.A1_at--458--111Chr08:21261625..21261649 (25 bp)
ATTCTGAGAGGCTACTTCGCGCGGT
LOC_Os08g34120
Os.24101.1.A1_at--521--3231Chr08:21261655..21261679 (25 bp)
CAAAAGGACTGGAGCGAGACCGGCA
LOC_Os08g34120
Os.24101.1.A1_at--498--8331Chr08:21261775..21261799 (25 bp)
GGCTCCACCGTCATGGACTGGGCGA
LOC_Os08g34120
Os.24101.1.A1_at--893--9311Chr08:21261838..21261862 (25 bp)
TCCCTCCTGATCTACGCATGGAAAT
LOC_Os08g34120
Os.24101.1.A1_at--308--831Chr08:21261855..21261879 (25 bp)
ATGGAAATCATAGCGGCGACGGCGA
LOC_Os08g34120
Os.24101.1.A1_at--524--4171Chr08:21261920..21261944 (25 bp)
CCCAAATCGCTGTAATTCGCGGTGT
LOC_Os08g34120
Os.24101.1.A1_at--997--151Chr08:21261954..21261978 (25 bp)
ATTTGAGCCTCGAGGGATCGAATTT
LOC_Os08g34120
Os.24101.1.A1_at--799--8051NONE
GGAGCGGAGTCTGTCCATTTTCGGA
NONE
Os.24101.1.A1_at--769--3531NONE
CATTTTCGGAGCACATTTCGCGTTT
NONE
Os.24101.1.A1_at--825--3311NONE
CACATTTCGCGTTTCTTGGTCAGAA
NONE
Os.24101.1.A1_at--270--3611Chr08:21262075..21262099 (25 bp)
CTTGGTCAGAATTCATTAGCTAGGA
LOC_Os08g34120
Target Sequence 
ATTCTGAGAGGCTACTTCGCGCGGTGGGGGCAAAAGGACTGGAGCGAGACCGGCAGCGAGAGGAGGAAGAGGGGGAGAGG
CCGGCGGCTGGCCAAGGCGAGCTCCTCCTCGTCGGCGTCCGTCGCCTCGTCGACGGCGTCGTGGGCCAGCGGCTCCACCG
TCATGGACTGGGCGAGCCCCGAGGAGGCCGAGATGCAGCGCGGCGATGGCTTCTCCCTCCTGATCTACGCATGGAAATCA
TAGCGGCGACGGCGACATTGTCCCGGTTGGTAAAATTATTCAACANNTTTCTCCCCCCAAATCGCTGTAATTCGCGGTGT
TNNNGNGNAATTTGAGCCTCGAGGGATCGAATTTGATCATTGGATTACAGTAGTAGCAAAATGCCAAGTGAAGTGAGCAG
AGCAAGTGATGGAGCGGAGTCTGTCCATTTTCGGAGCACATTTCGCGTTTCTTGGTCAGAATTCATTAGCTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24101.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis