Browse Element(s) Details


Os.19587.1.S2_at

Description gb:CB642269
DB_XREF= gi:29637260
DB_XREF=OSJNEb02F23.r
CLONE=OSJNEb02F23
TID=Os.19587.1
CNT=15
FEA=FLmRNA
TIER=ConsEnd
STK=1
UG=Os.19587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-H07, full insert sequence
FL= gb:AK106348.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0794010/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
GO:0004462molecular_functionlactoylglutathione lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19587.1.S2_at--220--8811Chr05:4282187..4282211 (25 bp)
TGTTCCTGGCACCAAACTGACATAT
LOC_Os05g07940
Os.19587.1.S2_at--1124--4931Chr05:4282307..4282331 (25 bp)
GCATTGCATGGATCTGGCAGGCCAA
LOC_Os05g07940
Os.19587.1.S2_at--554--8271Chr05:4282322..4282346 (25 bp)
GGCAGGCCAAGTTGTATCTCTTATT
LOC_Os05g07940
Os.19587.1.S2_at--997--6631Chr05:4282362..4282386 (25 bp)
GTTGTTCATTTCATTGTAGCTTCAC
LOC_Os05g07940
Os.19587.1.S2_at--48--1211Chr05:4282416..4282440 (25 bp)
AGTATTCTCTGCCTCTGTATGTCTC
LOC_Os05g07940
Os.19587.1.S2_at--1030--9431Chr05:4282451..4282475 (25 bp)
TCGGTCTCTGTCTCTGATCTATGAT
LOC_Os05g07940
Os.19587.1.S2_at--70--3871Chr05:4282513..4282537 (25 bp)
CTGATGCTGCATCACTGATTGTTGT
LOC_Os05g07940
Os.19587.1.S2_at--1122--4951Chr05:4282546..4282570 (25 bp)
GCATATGATCACTAGCTTGCCAATT
LOC_Os05g07940
Os.19587.1.S2_at--729--7371NONE
GTGACTCGTGTCATCTTATCATAAA
NONE
Os.19587.1.S2_at--612--2371Chr05:4282633..4282657 (25 bp)
AAACCTGACAACGTTGCTGACTCAT
LOC_Os05g07940
Os.19587.1.S2_at--421--8951Chr05:4282650..4282674 (25 bp)
TGACTCATAGCGCACACACGAAGAT
LOC_Os05g07940
Target Sequence 
TGTTCCTGGCACCAAACTGACATATATAGTTTTGTTAATTAGGTATATGATAAAGGCAGATTGGTTATTTGATTATTACA
NTTGTAATGAATCTTTAGCCANCTTACATAGATCAGAGATGCATTGCATGGATCTGGCAGGCCAAGTTGTATCTCTTATT
TCACACTGAATTATTGTTGTTCATTTCATTGTAGCTTCACATGCCAAANCNTNNATATGCAAANGACCTAGTATTCTCTG
CCTCTGTATGTCTCCCTCTCTGTCTCGGTCTCTGTCTCTGATCTATGATCTGTACATGAAATAGTGATTATATACTAATG
GACAAGCTGATGCTGCATCACTGATTGTTGTGGATGCATGCATATGATCACTAGCTTGCCAATTAGTTAAGGAGATATTA
TCACGAGCAACTTGTGTGTGTGTGTGTGACTCGTGTCATCTTATCATAAACCTGACAACGTTGCTGACTCATAGCGCACA
CACGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19587.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis