Browse Element(s) Details


OsAffx.29502.1.S1_at

Description tigr:9633.m00710
TID=OsAffx.29502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0793010/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29502.1.S1_at--318--951NONE
AGGACAAGCAGCTACCGATGCAATG
NONE
OsAffx.29502.1.S1_at--580--1572Chr05:4276552..4276571 (20 bp)
AGCTACCGATGCAATGTCCTGATAA
LOC_Os05g07930
OsAffx.29502.1.S1_at--321--2991Chr05:4276559..4276583 (25 bp)
AATGTCCTGATAACTCATCAGCTGA
LOC_Os05g07930
OsAffx.29502.1.S1_at--145--51Chr05:4276602..4276626 (25 bp)
ATTGACAATCAAAAAGCGGGCTAGA
LOC_Os05g07930
OsAffx.29502.1.S1_at--838--1471Chr05:4276640..4276878 (25 bp)
AGCACGACTTAGTGTTTACATCGAT
LOC_Os05g07930
OsAffx.29502.1.S1_at--1005--1253Chr05:4276880..4276904 (25 bp)
AGATTAGAGTGTCGAGGCCCTAGCC
LOC_Os05g07930
OsAffx.29502.1.S1_at--1093--6211Chr05:4276893..4276917 (25 bp)
GAGGCCCTAGCCCTGCTGATGCAAA
LOC_Os05g07930
OsAffx.29502.1.S1_at--1145--9972Chr11:13556404..13556423 (20 bp)
TAGCCCTGCTGATGCAAACAGCCAT
NONE
OsAffx.29502.1.S1_at--916--6313Chr05:4276910..4276934 (25 bp)
GATGCAAACAGCCATAACAAGCCTT
LOC_Os05g07930
OsAffx.29502.1.S1_at--115--9812Chr05:4276924..4276948 (25 bp)
TAACAAGCCTTACCCCTCGTCGGTG
LOC_Os05g07930
OsAffx.29502.1.S1_at--226--1791Chr05:4276935..4276959 (25 bp)
ACCCCTCGTCGGTGATCGAAGCCGA
LOC_Os05g07930
Target Sequence 
AGGACAAGCAGCTACCGATGCAATGTCCTGATAACTCATCAGCTGAAACCCCGATGAAACCCTTATTGACAATCAAAAAG
CGGGCTAGAGATTATGGTTCTAAGCACGACTTAGTGTTTACATCGATAAGATTAGAGTGTCGAGGCCCTAGCCCTGCTGA
TGCAAACAGCCATAACAAGCCTTACCCCTCGTCGGTGATCGAAGCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis