Browse Element(s) Details


Os.26779.1.S1_at

Description gb:AK068467.1
DB_XREF= gi:32978485
TID=Os.26779.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013156C03, full insert sequence.
FL= gb:AK068467.1 gb:AK105962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0796011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed
LOC_Os05g08020NANA5+4314883..4316263retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26779.1.S1_at--535--10811Chr05:4291125..4291149 (25 bp)
TTGTCACATGGCTGCTAAGTCTGCT
LOC_Os05g07960
Os.26779.1.S1_at--509--2851Chr05:4291109..4291133 (25 bp)
AAGTCTGCTTCCTTTGTACTACTAG
LOC_Os05g07960
Os.26779.1.S1_at--639--9071Chr05:4290908..4290932 (25 bp)
TGCTTAGTCTGATGATGCCCGTCAA
LOC_Os05g07960
Os.26779.1.S1_at--76--7091Chr05:4290888..4290912 (25 bp)
GTCAAGTGCCCATTTTCAACCATGT
LOC_Os05g07960
Os.26779.1.S1_at--115--1731Chr05:4290870..4290894 (25 bp)
ACCATGTTACTGTATTCTCCGTCAT
LOC_Os05g07960
Os.26779.1.S1_at--195--5872Chr06:12802589..12802614 (24 bp)
GAGCCATCATGCGTGAGTGCTTGAT
NONE
Os.26779.1.S1_at--612--231Chr05:4290785..4290809 (25 bp)
ATATTACTAATCCAGTCCCGTTCAT
LOC_Os05g07960
Os.26779.1.S1_at--49--4252Chr05:4290754..4290778 (25 bp)
CCGTCTGCCTGTTGATGCCAAGAAG
LOC_Os05g07960
Os.26779.1.S1_at--937--5372Chr05:4290733..4290757 (25 bp)
GAAGAACTTGTCTCTCTAGATCTGA
LOC_Os05g07960
Os.26779.1.S1_at--86--151Chr05:4290611..4290635 (25 bp)
ATTACTTGCTTGTCCTTTTGTGCAG
LOC_Os05g07960
Os.26779.1.S1_at--945--6891Chr05:4290587..4290611 (25 bp)
GTATCAGGTCTGTTGCTTGCTAAAA
LOC_Os05g07960
Target Sequence 
TTGTCACATGGCTGCTAAGTCTGCTTCCTTTGTACTACTAGTGTTGCTTGGCATTTTTTGCCATGAAATGAGTGTAAGGG
TTGCAGTCAAAGCTGACTACGGTTCTGGATCGCCTGACAAAGTTCTCAGAGGCTTCACTGAAGCATTACGAGGAGCTCAA
GCAGAATTATGAGATGGCTTGTGATGACTACAAGACGGGTCGATCAAATGCACATCTTGCTTAGTCTGATGATGCCCGTC
AAGTGCCCATTTTCAACCATGTTACTGTATTCTCCGTCATATTAGATTCCCTGTGATGGTTGCAGTTCAGCATCATTGAG
CCATCATGCGTGAGTGCTTGATATTACTAATCCAGTCCCGTTCATGCTTAGCCGTCTGCCTGTTGATGCCAAGAAGAACT
TGTCTCTCTAGATCTGATTTTGCTTCATCTGTAAATTGTGTAGGCATGTAAAAATTCAGGATGTAAAACAGTGGTTCTGT
TTCGTGGAATTTGAGTTGTATCAGTTATGATGACATTACTTGCTTGTCCTTTTGTGCAGTATCAGGTCTGTTGCTTGCTA
AAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis