Browse Element(s) Details

Os.10620.1.S1_at

Description

gb:AK119584.1
DB_XREF= gi:37989207
TID=Os.10620.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.10620 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023031G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-117-C06, full insert sequence.
FL= gb:AK069814.1 gb:AK119669.1 gb:AK119584.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g07940	11/11	lactoylglutathione lyase family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g07910	OsAffx.14587.1.S1_at	11/11	5	+	4261865..4262939	hypothetical protein
LOC_Os05g07920	Os.41695.15.S1_s_at	11/11	5	+	4265754..4272796	transposon protein, putative, Mutator sub-class
LOC_Os05g07920	Os.41695.5.S1_x_at	7/11	5	+	4265754..4272796	transposon protein, putative, Mutator sub-class
LOC_Os05g07920	Os.41695.3.S1_x_at	6/11	5	+	4265754..4272796	transposon protein, putative, Mutator sub-class
LOC_Os05g07920	Os.41695.2.S1_x_at	5/11	5	+	4265754..4272796	transposon protein, putative, Mutator sub-class
LOC_Os05g07920	Os.41695.4.S1_x_at	1/11	5	+	4265754..4272796	transposon protein, putative, Mutator sub-class
LOC_Os05g07930	OsAffx.29502.1.S1_at	10/11	5	+	4274310..4277005	GRF zinc finger family protein
LOC_Os05g07930	OsAffx.29502.2.S1_at	5/11	5	+	4274310..4277005	GRF zinc finger family protein
LOC_Os05g07930	OsAffx.29502.2.S1_x_at	4/11	5	+	4274310..4277005	GRF zinc finger family protein
LOC_Os05g07940	Os.19587.1.S1_at	11/11	5	+	4279452..4284082	lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940	Os.10620.1.S1_at	11/11	5	+	4279452..4284082	lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940	Os.19587.1.S2_at	10/11	5	+	4279452..4284082	lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950	OsAffx.26781.2.S1_at	10/11	5	+	4287115..4288441	F-box domain containing protein, expressed
LOC_Os05g07960	Os.26779.1.S1_at	11/11	5	+	4290554..4292377	F-box protein interaction domain containing protein, expressed
LOC_Os05g07960	OsAffx.26779.1.S1_x_at	1/11	5	+	4290554..4292377	F-box protein interaction domain containing protein, expressed
LOC_Os05g07970	Os.14919.1.S1_at	1/11	5	+	4293296..4294795	hypothetical protein
LOC_Os05g07980	OsAffx.26779.1.S1_x_at	9/11	5	+	4296238..4299886	expressed protein
LOC_Os05g07980	OsAffx.26779.1.S1_at	7/11	5	+	4296238..4299886	expressed protein
LOC_Os05g07980	Os.51733.1.S1_x_at	7/11	5	+	4296238..4299886	expressed protein
LOC_Os05g07980	Os.50315.2.A1_at	1/11	5	+	4296238..4299886	expressed protein
LOC_Os05g07990	OsAffx.26780.1.S1_at	9/11	5	+	4300724..4301864	hypothetical protein
LOC_Os05g08000	OsAffx.26781.1.S1_at	11/11	5	+	4303863..4305161	hypothetical protein
LOC_Os05g08010	Os.7402.1.S1_at	11/11	5	+	4307738..4309362	F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005975	biological_process	carbohydrate metabolism
GO:0008152	biological_process	metabolism
GO:0003824	molecular_function	catalytic activity
GO:0004462	molecular_function	lactoylglutathione lyase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.10620.1.S1_at--422--211	1	Chr05:4283612..4283636 (25 bp)	ACATGCTTGTGTGGCTGCAATGCAA	LOC_Os05g07940
Os.10620.1.S1_at--466--693	1	Chr05:4283649..4283673 (25 bp)	GTAGGCTGATGTACAAACTCACCAA	LOC_Os05g07940
Os.10620.1.S1_at--216--1009	1	Chr05:4283676..4283700 (25 bp)	TAGGTTATTTACTACTCCCTTCTCT	LOC_Os05g07940
Os.10620.1.S1_at--330--627	1	Chr05:4283725..4283749 (25 bp)	GATGTGACACACCTTCATACTACGA	LOC_Os05g07940
Os.10620.1.S1_at--367--767	1	Chr05:4283846..4283870 (25 bp)	GGGTTGGTCCACTTAAATAGCATGT	LOC_Os05g07940
Os.10620.1.S1_at--575--1009	1	Chr05:4283870..4283894 (25 bp)	TATGTGGGTTAGTGGTCAGCTCTCT	LOC_Os05g07940
Os.10620.1.S1_at--989--481	1	Chr05:4283888..4283912 (25 bp)	GCTCTCTTTCATCGCTAAATGCAAT	LOC_Os05g07940
Os.10620.1.S1_at--450--193	1	Chr05:4283915..4283939 (25 bp)	ACGGTTGTGGTTTGCTAGATCAGTT	LOC_Os05g07940
Os.10620.1.S1_at--746--711	1	Chr05:4283940..4283964 (25 bp)	GTCAGGTTATGCGATTGGGCTCACT	LOC_Os05g07940
Os.10620.1.S1_at--492--757	1	Chr05:4283956..4283980 (25 bp)	GGGCTCACTGGGAGTTTGTACATGA	LOC_Os05g07940
Os.10620.1.S1_at--499--761	1	Chr05:4283994..4284018 (25 bp)	GGGCAATGTAATCCCCTTTGTTATA	LOC_Os05g07940

Target Sequence

ACATGCTTGTGTGGCTGCAATGCAATTAGGGATGCAAGTAGGCTGATGTACAAACTCACCAAAATAGGTTATTTACTACT
CCCTTCTCTCGTAAAAAAACCAATCTAGGATCGGATGTGACACACCTTCATACTACGAATCTAGACATATATATGTCCAG
ATTCACAGTACTATAATATGTCATATCTGATTCTAGGTTTGTTTTTTATAGCAAGGATGGAGTACGTGGTTGGTGGGTTG
GTCCACTTAAATAGCATGTATGTGGGTTAGTGGTCAGCTCTCTTTCATCGCTAAATGCAATGAACGGTTGTGGTTTGCTA
GATCAGTTGTCAGGTTATGCGATTGGGCTCACTGGGAGTTTGTACATGAGTACTATGGTGTTGGGCAATGTAATCCCCTT
TGTTATA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis