Browse Element(s) Details


OsAffx.14587.1.S1_at

Description tigr:9633.m00709
TID=OsAffx.14587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0791011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed
LOC_Os05g07900Os.18557.1.S1_at11/115+4244390..4248146Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14587.1.S1_at--461--6631Chr05:4262320..4262344 (25 bp)
GTTGTGCATGGACTTCGGCTTCTTC
LOC_Os05g07910
OsAffx.14587.1.S1_at--686--9271Chr05:4262281..4262305 (25 bp)
TCCTGTATGGTGTCCGCTGGCGATT
LOC_Os05g07910
OsAffx.14587.1.S1_at--142--2072Chr05:4262253..4262277 (25 bp)
ACTTGTGCGGTAGCCATGCGTTGAA
LOC_Os05g07910
OsAffx.14587.1.S1_at--263--4511Chr05:4262112..4262136 (25 bp)
GCCGCAACCTTCTTGGAGACGTTGG
LOC_Os05g07910
OsAffx.14587.1.S1_at--634--1391Chr05:4262096..4262120 (25 bp)
AGACGTTGGTGTGGAGTCTTCTTCC
LOC_Os05g07910
OsAffx.14587.1.S1_at--761--8971Chr05:4262051..4262075 (25 bp)
TGAAAATTGCCCTGCTCCTGGGACA
LOC_Os05g07910
OsAffx.14587.1.S1_at--161--8651Chr05:4262033..4262057 (25 bp)
TGGGACAGGCGATGGCGACACCCTT
LOC_Os05g07910
OsAffx.14587.1.S1_at--974--3591Chr05:4262011..4262035 (25 bp)
CTTGGCGTCGTAACCTCATTGGAGG
LOC_Os05g07910
OsAffx.14587.1.S1_at--361--8531Chr05:4261992..4262016 (25 bp)
TGGAGGTGTCGTTTGAAGGCCCTTT
LOC_Os05g07910
OsAffx.14587.1.S1_at--1132--10031Chr05:4261950..4261974 (25 bp)
TAGATGATTTGTCCTCCTATGCCGG
LOC_Os05g07910
OsAffx.14587.1.S1_at--954--591Chr05:4261932..4261956 (25 bp)
ATGCCGGCGCTTTTGGGATGGCCAT
LOC_Os05g07910
Target Sequence 
GTTGTGCATGGACTTCGGCTTCTTCCTCGAGAAGGGGCCTCCTGTATGGTGTCCGCTGGCGATTGGCACTTGTGCGGTAG
CCATGCGTTGAAGGGATTTTGGATGGTAGCGGCTGTTGGGAGTGATGGAGATGTGGCATGGGAGGGCCAAAGGTTCTTTG
GGAGAAAGTCCAGGCTGTTTAGGGTTGGCAGCGGCAGCGCTTTCTGGCGCCGCAACCTTCTTGGAGACGTTGGTGTGGAG
TCTTCTTCCTTCCTAGGGGATTATTCGGGTGAAAATTGCCCTGCTCCTGGGACAGGCGATGGCGACACCCTTGGCGTCGT
AACCTCATTGGAGGTGTCGTTTGAAGGCCCTTTCCCACTAATCTCTAATCTAGATGATTTGTCCTCCTATGCCGGCGCTT
TTGGGATGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis