Browse Element(s) Details


Os.18557.1.S1_at

Description gb:AK103471.1
DB_XREF= gi:32988680
TID=Os.18557.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18557 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130A21, full insert sequence.
FL= gb:AK103471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0790011/11Brittle-1 protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed
LOC_Os05g07900Os.18557.1.S1_at11/115+4244390..4248146Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18557.1.S1_at--386--5171Chr05:4247585..4247609 (25 bp)
GCAAGCACATGCAAGTTGGCGCAGT
LOC_Os05g07900
Os.18557.1.S1_at--786--4811Chr05:4247644..4247668 (25 bp)
GCTCTCCTGAGCATTCTGGAGGATG
LOC_Os05g07900
Os.18557.1.S1_at--642--10071Chr05:4247795..4247819 (25 bp)
TAGTGTGTCCTTACACTCTTCAGAG
LOC_Os05g07900
Os.18557.1.S1_at--759--5871Chr05:4247817..4247841 (25 bp)
GAGCGCAGTTTTGCAACTTTTTTGA
LOC_Os05g07900
Os.18557.1.S1_at--592--10671Chr05:4247838..4247862 (25 bp)
TTGACTGGAGGCATCTTTTGGGCTT
LOC_Os05g07900
Os.18557.1.S1_at--590--9791Chr05:4247912..4247936 (25 bp)
TAAGAATTTTTACCCCAACTCTGTG
LOC_Os05g07900
Os.18557.1.S1_at--108--10871Chr05:4247945..4247969 (25 bp)
TTGGCCTGATAAAACCTGCCTCTTT
LOC_Os05g07900
Os.18557.1.S1_at--851--3671Chr05:4247966..4247990 (25 bp)
CTTTCCCCAGTTTTGCTTCAGGATA
LOC_Os05g07900
Os.18557.1.S1_at--495--8271Chr05:4248058..4248082 (25 bp)
GGCAGTCATAATTCCCAGGTGGTGA
LOC_Os05g07900
Os.18557.1.S1_at--544--7491Chr05:4248076..4248100 (25 bp)
GTGGTGAAACAACTACGAGACTCTG
LOC_Os05g07900
Os.18557.1.S1_at--985--5711Chr05:4248094..4248118 (25 bp)
GACTCTGTAATCTGTGTGCAGCTTT
LOC_Os05g07900
Target Sequence 
GCAAGCACATGCAAGTTGGCGCAGTCGNTGGCAGGAAGGTCTACAAGAACATGCTTCANGCTCTCCTGAGCATTCTGGAG
GATGAAGGGNTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAANTTGGTGCCAGCCGCCNNTATTTCGTTTAT
NTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATNACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAG
TTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGT
AGTTTCTTAAGAATTTTTACCCCAACTCTGTGNTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTC
AGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTC
ATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis