Browse Element(s) Details


Os.16765.1.S1_at

Description gb:AK068085.1
DB_XREF= gi:32978103
TID=Os.16765.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16765 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131P13, full insert sequence.
FL= gb:AK068085.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0786011/11UvrB/uvrC motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed
LOC_Os05g07900Os.18557.1.S1_at11/115+4244390..4248146Brittle-1 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16765.1.S1_at--1090--5111Chr05:4222080..4222104 (25 bp)
GCACATCGACAAAGCTGGGTCGTCT
LOC_Os05g07860
Os.16765.1.S1_at--540--4711Chr05:4222067..4222091 (25 bp)
GCTGGGTCGTCTACATTCAATGTCG
LOC_Os05g07860
Os.16765.1.S1_at--192--5611Chr05:4222007..4222031 (25 bp)
GACAACGATGATGTTCTCCTCTAAA
LOC_Os05g07860
Os.16765.1.S1_at--156--6731Chr05:4221995..4222019 (25 bp)
GTTCTCCTCTAAATGTGATTGGGTA
LOC_Os05g07860
Os.16765.1.S1_at--677--1191Chr05:4221909..4221933 (25 bp)
AGTAGTGCTGTTAGTGATGTGGCTA
LOC_Os05g07860
Os.16765.1.S1_at--1073--1011Chr05:4221823..4221847 (25 bp)
AGGTACCAAAGTTCAAGATCAGAGT
LOC_Os05g07860
Os.16765.1.S1_at--227--6451Chr05:4221807..4221831 (25 bp)
GATCAGAGTATCAGACAGGCAAAAC
LOC_Os05g07860
Os.16765.1.S1_at--1086--5671Chr05:4221702..4221726 (25 bp)
GACTTGTGTGTCATCTAACTTTTGA
LOC_Os05g07860
Os.16765.1.S1_at--872--6891Chr05:4221642..4221666 (25 bp)
GTATAAGCTGCATGGAACTCTTGTA
LOC_Os05g07860
Os.16765.1.S1_at--851--8171Chr05:4221629..4221653 (25 bp)
GGAACTCTTGTATTATCTCGAAAAA
LOC_Os05g07860
Os.16765.1.S1_at--208--10191Chr05:4221575..4221599 (25 bp)
TATATTGCACTAGGATTTACTGGTC
LOC_Os05g07860
Target Sequence 
GCACATCGACAAAGCTGGGTCGTCTACATTCAATGTCGCAATTGCACCANTTNTNTCTGTCAATCCTTGGAGATGACAAC
GATGATGTTCTCCTCTAAATGTGATTGGGTATCAGAATGAGTTTGAATAAGATGATGTCNCCAGCAAGGAATTTGCATAA
TACNCAAACACGAGTAGTGCTGTTAGTGATGTGGCTAGAGTTCTNTACTGGAAACTCCTGNGAATGCAAATTTTTGTTAA
GCTAGCTGTGAATTGGGAAGGTACCAAAGTTCAAGATCAGAGTATCAGACAGGCAAAACATGGTTTGGTGAAATATTAGA
GTTAATTTAGNCNCNCACACAAAAAAAAACTNCACNTACNTGTAAATTGAGGTATATGATGGACTTGTGTGTCATCTAAC
TTTTGAATGTACAGCATAGAACTATATAGAGCTTGTTGAGAGTATAAGCTGCATGGAACTCTTGTATTATCTCGAAAAAA
TGATTTTGTAATGTTATAGTTTCATAAATATATTGCACTAGGATTTACTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16765.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis