Browse Element(s) Details


OsAffx.26776.1.S1_at

Description tigr:9633.m00700
TID=OsAffx.26776.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26776.1.S1_at--341--4171Chr05:4200981..4201005 (25 bp)
CGCCATGCGCGCTGTGGGCATGCAT
LOC_Os05g07830
OsAffx.26776.1.S1_at--1003--4131Chr05:4200972..4200996 (25 bp)
CGCTGTGGGCATGCATGCTCCAGAA
LOC_Os05g07830
OsAffx.26776.1.S1_at--543--9051Chr05:4200961..4200985 (25 bp)
TGCATGCTCCAGAACCGCTTCGGCG
LOC_Os05g07830
OsAffx.26776.1.S1_at--350--8191Chr05:4200861..4200885 (25 bp)
GGAAGGGCGGGTTCATCCACCTCCT
LOC_Os05g07830
OsAffx.26776.1.S1_at--722--9651Chr05:4200693..4200717 (25 bp)
TCACCATGTCGCTCTTTGACCAAGA
LOC_Os05g07830
OsAffx.26776.1.S1_at--712--3491Chr05:4200689..4200713 (25 bp)
CATGTCGCTCTTTGACCAAGAAAAT
LOC_Os05g07830
OsAffx.26776.1.S1_at--372--8051Chr05:4200661..4200685 (25 bp)
GGAGAGGCTGACATCCGTGGCCCAC
LOC_Os05g07830
OsAffx.26776.1.S1_at--1123--2091Chr05:4200651..4200675 (25 bp)
ACATCCGTGGCCCACATAGGGTAAT
LOC_Os05g07830
OsAffx.26776.1.S1_at--460--8411Chr05:4200643..4200667 (25 bp)
GGCCCACATAGGGTAATCTGGTCTT
LOC_Os05g07830
OsAffx.26776.1.S1_at--759--3172Chr05:4200637..4200661 (25 bp)
CATAGGGTAATCTGGTCTTTTTTGA
LOC_Os05g07830
OsAffx.26776.1.S1_at--772--7832Chr05:4200632..4200656 (25 bp)
GGTAATCTGGTCTTTTTTGATTGTT
LOC_Os05g07830
Target Sequence 
CGCCATGCGCGCTGTGGGCATGCATGCTCCAGAACCGCTTCGGCGTCTTCCGCCATGATGACTGGATCGGCCGCCCCTTC
GGCTGCAAGGTCCACAGCGCCGCCACCGCCGGAGGCAAGGGGAAGGGCGGGTTCATCCACCTCCTTGCGCCCACCTCTGA
GCTGTGGACGCTCATGCTCAGCCACCGGACGCAGATCCTCTACCTCGCCGACATCAGCCTCGTCGTCTCCTACCTCGAGC
TCGTCCCCGGGTGCCACGTGCTCGAGTCCGGCTCCGGGTGCGGCTCCCTCACCATGTCGCTCTTTGACCAAGAAAATAGA
GGAGAGGCTGACATCCGTGGCCCACATAGGGTAATCTGGTCTTTTTTGATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis