Browse Element(s) Details


Os.51752.2.S1_x_at

Description gb:AK063609.1
DB_XREF= gi:32973627
TID=Os.51752.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-D02, full insert sequence.
FL= gb:AK063609.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g078109/11universal stress protein family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed
LOC_Os05g07780Os.20602.2.S1_x_at11/115+4169636..4171816hAT family dimerisation domain containing protein
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51752.2.S1_x_at--946--2051Chr05:4183783..4183807 (25 bp)
ACTTCTCGGCGTGCAGCAAGGCGGC
LOC_Os05g07810
Os.51752.2.S1_x_at--913--1771Chr05:4183846..4183870 (25 bp)
ACCGGCTGGTGCTTGTCCACGTCAA
LOC_Os05g07810
Os.51752.2.S1_x_at--956--2931NONE
AAGGCTCACCGATGATCCCGCTGGT
NONE
Os.51752.2.S1_x_at--17--4091Chr05:4184500..4184524 (25 bp)
CGACCCGCGGGTGAGCAGGATCTAC
LOC_Os05g07810
Os.51752.2.S1_x_at--644--8911NONE
TGAGCAGGATCTACGGCGCCGCAGC
NONE
Os.51752.2.S1_x_at--21--1951Chr05:4185585..4185609 (25 bp)
ACGGCGGCGAGCTACTACTGATGGC
LOC_Os05g07810
Os.51752.2.S1_x_at--184--871Chr05:4185605..4185629 (25 bp)
ATGGCTGATCAGCTGCGATTTCCCC
LOC_Os05g07810
Os.51752.2.S1_x_at--590--6511Chr05:4185621..4185645 (25 bp)
GATTTCCCCACGTATGTCTCGGTCA
LOC_Os05g07810
Os.51752.2.S1_x_at--355--7171Chr05:4185636..4185660 (25 bp)
GTCTCGGTCAGCTGTAAAGTCGGTT
LOC_Os05g07810
Os.51752.2.S1_x_at--333--8951Chr05:4185667..4185691 (25 bp)
TGACTGGGAGTCTGGGACTGTCTCT
LOC_Os05g07810
Os.51752.2.S1_x_at--836--7152Chr05:4185686..4185710 (25 bp)
GTCTCTGCTTGACTGCTTGTGCATA
LOC_Os05g07810
Target Sequence 
ACTTCTCGGCGTGCAGCAAGGCGGCGCTGCGGTGGGCGGCGGCGAGCCTGGCACGCCCCGGCGACCGGCTGGTGCTTGTC
CACGTCAAGCCCTCGTTCCAGTACGAGCAGGGCGTCGCCCACCTCTGGGAGCAGCAAGGCTCACCGATGATCCCGCTGGT
GGAGCTGGCCGACCCGCGGGTGAGCAGGATCTACGGCGCCGCAGCCACCGCAGCCCGTCGCAACGGCGGCGAGCTACTAC
TGATGGCTGATCAGCTGCGATTTCCCCACGTATGTCTCGGTCAGCTGTAAAGTCGGTTGCTGTGTGACTGGGAGTCTGGG
ACTGTCTCTGCTTGACTGCTTGTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51752.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis