Browse Element(s) Details


OsAffx.14585.1.S1_s_at

Description tigr:9633.m00699
TID=OsAffx.14585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0782011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07780Os.20602.2.S1_x_at11/115+4169636..4171816hAT family dimerisation domain containing protein
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14585.1.S1_s_at--976--8711Chr05:4194217..4194241 (25 bp)
TGTCGGCCATCGTGGCGGCCATCGC
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--746--7231Chr05:4194264..4194288 (25 bp)
GTCGCGCTGCTGTACATAATGCTCA
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--1122--2771Chr05:4194442..4194466 (25 bp)
AAGAGAAGTACAGCTCGGCGTCGTC
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--762--1391Chr05:4194469..4194493 (25 bp)
AGACGACCAGCGTGCTGCACGGGAA
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--493--8991Chr05:4194529..4194553 (25 bp)
TGAAGCCGGCGAGCAAGTGCTGAAC
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--1123--5171Chr05:4194541..4194565 (25 bp)
GCAAGTGCTGAACACGACGACGACC
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--111--4351Chr05:4194568..4194592 (25 bp)
CCATGGATCGCCTCAAGCTCATCTT
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--1038--1571Chr05:4194583..4194607 (25 bp)
AGCTCATCTTCTTCCTGTTAATTGT
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--970--9571Chr05:4194592..4194616 (25 bp)
TCTTCCTGTTAATTGTTGTTTCTTT
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--536--9191Chr05:4194621..4194645 (25 bp)
TGCCTTTGTTATTGTCATGTGTTGT
LOC_Os05g07820
OsAffx.14585.1.S1_s_at--130--3511Chr05:4194636..4194660 (25 bp)
CATGTGTTGTTGATCAGCGAAGCAA
LOC_Os05g07820
Target Sequence 
TGTCGGCCATCGTGGCGGCCATCGCCGTCGTGTCGGCCGCGGTGTGCGTCGCGCTGCTGTACATAATGCTCAGGATGTGG
AGCAACTGGAGGGCCGTCGCCTCCGTGTCGAGCTCCGACGGCGAGGAGACGGCGTCCTCGGTGGCGGCGGCGCACGGCAA
GTGGTGCGCCGGCGACGGCAAGTACTGGAAGGTCGGGTCGGTGTCGGTGGCGTCGTCCGCCGCCGAAGAGAAGTACAGCT
CGGCGTCGTCGGAGACGACCAGCGTGCTGCACGGGAAGCCGGCGGAGGCGGCCGGTGGCGGCGCCGGCGCGGTGAAGCCG
GCGAGCAAGTGCTGAACACGACGACGACCCACCATGGATCGCCTCAAGCTCATCTTCTTCCTGTTAATTGTTGTTTCTTT
ACCTTGCCTTTGTTATTGTCATGTGTTGTTGATCAGCGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14585.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis