Browse Element(s) Details


Os.54301.1.S1_at

Description gb:AK103197.1
DB_XREF= gi:32988406
TID=Os.54301.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122A02, full insert sequence.
FL= gb:AK103197.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g078305/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54301.1.S1_at--540--4751NONE
GCTGCACAACTTGAGGTGACGACAA
NONE
Os.54301.1.S1_at--571--4791Chr05:4203067..4203091 (25 bp)
GAATCCAAAGTACACAAGACCCCAT
NONE
Os.54301.1.S1_at--410--2771Chr05:4203052..4203076 (25 bp)
AAGACCCCATTTAATTGGCTGAATG
NONE
Os.54301.1.S1_at--1025--8331Chr05:4203036..4203060 (25 bp)
GGCTGAATGCATATCCAGGTGACAA
NONE
Os.54301.1.S1_at--1146--2431Chr05:4202993..4203017 (25 bp)
AAAAGGCTGGTCTGCATACTCTGCA
NONE
Os.54301.1.S1_at--777--2791Chr05:4202950..4202974 (25 bp)
AAGATTGGCCTCCAAAGCTACATCA
NONE
Os.54301.1.S1_at--629--6411Chr05:4202787..4202811 (25 bp)
GATCTCTGTCAGGTACTGCTTTTGA
LOC_Os05g07830
Os.54301.1.S1_at--864--5931Chr05:4202757..4202781 (25 bp)
GAGCAGTCACGTTATACTGACACGC
LOC_Os05g07830
Os.54301.1.S1_at--1067--6431Chr05:4202677..4202701 (25 bp)
GATCATGTTGATATTGTTGGCTAGC
LOC_Os05g07830
Os.54301.1.S1_at--756--5451Chr05:4202647..4202671 (25 bp)
GAACTTTTTTGTGTTATCCTCTGAA
LOC_Os05g07830
Os.54301.1.S1_at--41--7431Chr05:4202637..4202661 (25 bp)
GTGTTATCCTCTGAATTCTTGTGGG
LOC_Os05g07830
Target Sequence 
GCTGCACAACTTGAGGTGACGACAAGGAACAGCAAGTGAACAAAACAGTTCCATATATTGGAATCCAAAGTACACAAGAC
CCCATTTAATTGGCTGAATGCATATCCAGGTGACAAAATGCAAATGACAGCCAGAAAAGGCTGGTCTGCATACTCTGCAG
GTAAGTAAGCAGGAGAAAAGATTGGCCTCCAAAGCTACATCAAAATGCAGCCATGGATGAAATTTCTGGTCAAAAGAACA
GAGAGGAAGCATGCAACAATCTGATGGGTATAGCATGCAATGCAAACTCATGTACTTCTGCTGAAAATGCTGCTCTGCCT
ATGCCATGTGAAAATGTATGGATCTCTGTCAGGTACTGCTTTTGAGTTTTGAGCAGTCACGTTATACTGACACGCAGATG
GTAGTAGAGCAAAAGACAAAGTTCTTGGTGTTTTTTTTTTTTTTAATCTCTGATCATGTTGATATTGTTGGCTAGCTAGG
GGAACTTTTTTGTGTTATCCTCTGAATTCTTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis