Browse Element(s) Details


OsAffx.26777.1.S1_at

Description tigr:9633.m00702
TID=OsAffx.26777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to receptor-like kinase homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0785010/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed
LOC_Os05g07820OsAffx.14585.1.S1_s_at11/115+4189805..4194694Leucine Rich Repeat family protein, expressed
LOC_Os05g07830OsAffx.26776.1.S1_at11/115+4200575..4202939hypothetical protein
LOC_Os05g07830Os.54301.1.S1_at5/115+4200575..4202939hypothetical protein
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26777.1.S1_at--299--9931Chr05:4210311..4210335 (25 bp)
TACGGCTTCGGATTCTTGTTGATCG
LOC_Os05g07850
OsAffx.26777.1.S1_at--197--6391Chr05:4210291..4210315 (25 bp)
GATCGAGTTAATCACCGGTCGGAAA
LOC_Os05g07850
OsAffx.26777.1.S1_at--1080--10271Chr05:4209652..4209676 (25 bp)
TTTGCTCTGCACAATGTACAACCCT
LOC_Os05g07850
OsAffx.26777.1.S1_at--1020--2591Chr05:4209633..4209657 (25 bp)
AACCCTGACCAACGACCAAGTATGG
LOC_Os05g07850
OsAffx.26777.1.S1_at--271--1291Chr05:4209534..4209558 (25 bp)
AGATCGAAACCGAGCACGCCGGAGT
LOC_Os05g07850
OsAffx.26777.1.S1_at--146--8731Chr05:4209503..4209527 (25 bp)
TGTCATCCCCTGTAAATTTTGCTTC
LOC_Os05g07850
OsAffx.26777.1.S1_at--511--9651Chr05:4209460..4209484 (25 bp)
TCAGTTGGAAGCTGTTGAGCTCTCA
LOC_Os05g07850
OsAffx.26777.1.S1_at--117--6011Chr05:4209114..4209138 (25 bp)
GAGAGTTTTTCTTTTCTCCAGAGTT
LOC_Os05g07850
OsAffx.26777.1.S1_at--433--271Chr05:4209081..4209105 (25 bp)
ATATGTTTGGTTTGCTTCTGTCAGA
LOC_Os05g07850
OsAffx.26777.1.S1_at--785--2271NONE
AAATCTGGCTTGCTAGCTAGCTCTG
NONE
OsAffx.26777.1.S1_at--308--6011Chr05:4208201..4208225 (25 bp)
GAGAGCTCTGGATTTGGCCGGCACA
LOC_Os05g07850
Target Sequence 
TACGGCTTCGGATTCTTGTTGATCGAGTTAATCACCGGTCGGAAAACGATGGAGCTTCATGAGGATGAGTATCAGGAGGG
AGGAATTCTTGATTGGGCAAAGGAGCTTCTTGAAGGAAATAAGCTAAGGTCATTTGTGGACAGTAGACTGAGAGACAACT
ATGTCATTGCTGAGTTGGAGGAAATGGTTAAGATAGCTTTGCTCTGCACAATGTACAACCCTGACCAACGACCAAGTATG
GCTGAGATTGCTGGAATGCTGCAAGAGAGTGATGGTTCAGTTGTGGAGAAATGGGAGACTCTGAAAGATGCCGAGAGATC
GAAACCGAGCACGCCGGAGTTCATGCTGTCATCCCCTGTAAATTTTGCTTCAGATGAGTGCAATTCAATTCAGTTGGAAG
CTGTTGAGCTCTCAGGGCCAAGAGAGTTTTTCTTTTCTCCAGAGTTTTTGGTAGATATGTTTGGTTTGCTTCTGTCAGAA
GTCAAATCTGGCTTGCTAGCTAGCTCTGCTGCTGTTGCAAAATGTGAGCTATCTAGGGAGAGCTCTGGATTTGGCCGGCA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis