Browse Element(s) Details


Os.27613.1.A1_at

Description gb:CB679962
DB_XREF= gi:29683687
DB_XREF=OSJNEf04C06.f
CLONE=OSJNEf04C06
TID=Os.27613.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27613 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_198317.1 (A.thaliana) phosphatephosphoenolpyruvate translocator precursor (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0787011/11Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07840OsAffx.14586.1.S1_s_at10/115+4203967..4204586hypothetical protein
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed
LOC_Os05g07900Os.18557.1.S1_at11/115+4244390..4248146Brittle-1 protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015712biological_processhexose phosphate transport
GO:0015717biological_processtriose phosphate transport
GO:0009528cellular_componentplastid inner membrane
GO:0005355molecular_functionglucose transporter activity
GO:0009670molecular_functiontriose-phosphate transporter activity
GO:0015152molecular_functionglucose-6-phosphate transporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27613.1.A1_at--1091--9571Chr05:4232177..4232201 (25 bp)
TCTTGCTGGCACTTGTTTTCATTTT
LOC_Os05g07870
Os.27613.1.A1_at--997--6891Chr05:4232451..4232475 (25 bp)
GTATCACCTGTGACCCATTCTGTTG
LOC_Os05g07870
Os.27613.1.A1_at--938--10591Chr05:4232468..4232492 (25 bp)
TTCTGTTGCCAACTGTGTCAAACGA
LOC_Os05g07870
Os.27613.1.A1_at--632--2591Chr05:4232488..4232512 (25 bp)
AACGAGTTGTGGTCATCGTCTCATC
LOC_Os05g07870
Os.27613.1.A1_at--921--9751Chr05:4232546..4232656 (25 bp)
TAATGCCCTTGGAACTGGCGTTGCT
LOC_Os05g07870
Os.27613.1.A1_at--989--5571Chr05:4232777..4232801 (25 bp)
GAAATGGGCCGCCAAGCAATCACTT
LOC_Os05g07870
Os.27613.1.A1_at--463--10591Chr05:4232805..4232829 (25 bp)
TTCTCTCCAATTTGTCTTTTGCCAG
LOC_Os05g07870
Os.27613.1.A1_at--666--10291Chr05:4232822..4232846 (25 bp)
TTTGCCAGCTTGTCTGGGTCTTAGA
LOC_Os05g07870
Os.27613.1.A1_at--750--7851Chr05:4232875..4232899 (25 bp)
GGTAGTGATGGACCGGCACCAAAAT
LOC_Os05g07870
Os.27613.1.A1_at--755--10651Chr05:4232962..4232986 (25 bp)
TTCCTGTCCAAGAATATTGCCTCCT
LOC_Os05g07870
Os.27613.1.A1_at--658--5211Chr05:4232973..4232996 (24 bp)
GAATATTGCCTCCTTTTTTACTGGA
LOC_Os05g07870
Target Sequence 
TCTTGCTGGCACTTGTTTTCATTTTTACCAACAGGTTTCTTATAGTTTATTGGCTANAGTATCACCTGTGACCCATTCTG
TTGCCAACTGTGTCAAACGAGTTGTGGTCATCGTCTCATCCGTTCTCTTCTTCAGAACTCCNATTTCACCTATTAATGCC
CTTGGAACTGGCGTTGCTCTANCTGGAGTTTTCCTGTACTCTAGGTTCAAAAAAGCTAAACCAAAGGCTAAGACTGCATG
AGTCAACATACACAGCTGCAATTTAACTANAAGATTCAGGNTTATCTCTTCTTGAGGTGAAATGGGCCGCCAAGCAATCA
CTTGGCTTCTCTCCAATTTGTCTTTTGCCAGCTTGTCTGGGTCTTAGAAGCTTGTGTATAANATTTTTCTCANGAAGGTA
GTGATGGACCGGCACCAAAATAACAANNTAACATTGTCAGANGATTTCTCANGAGAAATGAATTTTGGCACATACTTTTG
AAATTCCTGTCCAAGAATATTGCCTCCTTTTTTACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27613.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis