Browse Element(s) Details


Os.51394.1.S1_at

Description gb:AK062702.1
DB_XREF= gi:32972720
TID=Os.51394.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B03, full insert sequence.
FL= gb:AK062702.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0789011/11Embryo-specific protein 3, containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed
LOC_Os05g07900Os.18557.1.S1_at11/115+4244390..4248146Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51394.1.S1_at--899--3931Chr05:4240972..4240996 (25 bp)
CGGACATTGTCAGCGTCGCGTTCGG
LOC_Os05g07890
Os.51394.1.S1_at--1028--7631Chr05:4241197..4241221 (25 bp)
GGGAGAAGCCGTCCACCTTCTACTT
LOC_Os05g07890
Os.51394.1.S1_at--42--5751Chr05:4241238..4241262 (25 bp)
GACGGCGTCTGGTACGGCCACAACC
LOC_Os05g07890
Os.51394.1.S1_at--681--9291Chr05:4241310..4241334 (25 bp)
TCCGCTTCACCTCTAGGCTAGGGTA
LOC_Os05g07890
Os.51394.1.S1_at--722--10071Chr05:4241323..4241347 (25 bp)
TAGGCTAGGGTAGCTGCTCGCTCCG
LOC_Os05g07890
Os.51394.1.S1_at--802--4791Chr05:4241338..4241362 (25 bp)
GCTCGCTCCGCAATGTACTAGTAGT
LOC_Os05g07890
Os.51394.1.S1_at--1071--6911Chr05:4241358..4241382 (25 bp)
GTAGTACTACGGAATTGGCGATTTT
LOC_Os05g07890
Os.51394.1.S1_at--807--3151Chr05:4241370..4241394 (25 bp)
AATTGGCGATTTTCGGAATTCGGAT
LOC_Os05g07890
Os.51394.1.S1_at--286--9451Chr05:4241382..4241406 (25 bp)
TCGGAATTCGGATGCATCCATCCAT
LOC_Os05g07890
Os.51394.1.S1_at--529--4972Chr05:4241395..4241419 (25 bp)
GCATCCATCCATCACTCAAGAATAA
LOC_Os05g07890
Os.51394.1.S1_at--14--1471Chr05:4241413..4241437 (25 bp)
AGAATAAACAGCCTCGTGTGTGTGA
LOC_Os05g07890
Target Sequence 
CGGACATTGTCAGCGTCGCGTTCGGGGACGCGTACCGGAACGAGGCGTACGGCGCGCGGCTGCCGGCGGGCGGGGCGTCG
GGGGCGCTCGACCGGTGCGCCGTCGACGCGTTCCGCGTCGGCGGGCAGTGCGGGTACGGCGTCTGCTACCTCTACCTCCG
CCGCGCCGGCCGCGACGGGTGGGCGCCGGAGTGGGTGCAGGTGTTCGAGCCTGGCGCCGCCGCCGGGGAGAAGCCGTCCA
CCTTCTACTTCGGCTCGCCGCTGCCCGACGGCGTCTGGTACGGCCACAACCGCTGCCCCAAGGCGTCCCCGGCCATGGCG
GCGCGCCGGACGAACACCTCCGCTTCACCTCTAGGCTAGGGTAGCTGCTCGCTCCGCAATGTACTAGTAGTACTACGGAA
TTGGCGATTTTCGGAATTCGGATGCATCCATCCATCACTCAAGAATAAACAGCCTCGTGTGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis