Browse Element(s) Details


OsAffx.4272.1.S1_at

Description tigr:9633.m00705
TID=OsAffx.4272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phospholipase d alpha 1 precursor (ec 3.1.4.4) (pld alpha 1) (choline phosphatase 1) (phosphatidylcholine-hydrolyzing phospholipase d 1). (rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0788011/11Phospholipase D alpha 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07850OsAffx.26777.1.S1_at10/115+4208166..4217999Protein kinase domain containing protein
LOC_Os05g07860Os.16765.1.S1_at11/115+4221569..4224764UvrB/uvrC motif family protein, expressed
LOC_Os05g07870Os.27613.1.A1_at11/115+4228015..4233055Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative, expressed
LOC_Os05g07880OsAffx.4272.1.S1_at11/115+4233868..4238093Phospholipase D alpha 1 precursor, putative, expressed
LOC_Os05g07890Os.51394.1.S1_at11/115+4240661..4241468Embryo-specific protein 3, containing protein, expressed
LOC_Os05g07900Os.18557.1.S1_at11/115+4244390..4248146Brittle-1 protein, chloroplast precursor, putative, expressed
LOC_Os05g07910OsAffx.14587.1.S1_at11/115+4261865..4262939hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0030136cellular_componentclathrin-coated vesicle
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4272.1.S1_at--634--4071Chr05:4234659..4234683 (25 bp)
CGAGTACGAGCCACCGGAGCAGGCC
LOC_Os05g07880
OsAffx.4272.1.S1_at--203--3951Chr05:4234623..4234647 (25 bp)
CGGCTACTTCCACGCGCAGCAGAAT
LOC_Os05g07880
OsAffx.4272.1.S1_at--281--4591Chr05:4234610..4234634 (25 bp)
GCGCAGCAGAATCGCCGCTTCATGA
LOC_Os05g07880
OsAffx.4272.1.S1_at--915--9931Chr05:4234583..4234607 (25 bp)
TACGTCCACACCAAGATGATGATCG
LOC_Os05g07880
OsAffx.4272.1.S1_at--315--1051Chr05:4234342..4234366 (25 bp)
AGGTGCACGGGTTCAGGATGGCGCT
LOC_Os05g07880
OsAffx.4272.1.S1_at--934--7771Chr05:4234315..4234339 (25 bp)
GGTACGAGCACCTCGGTACCGTCGA
LOC_Os05g07880
OsAffx.4272.1.S1_at--1109--9211Chr05:4234282..4234306 (25 bp)
TCCAGCGGCCGGAGAGCCTCGACTG
LOC_Os05g07880
OsAffx.4272.1.S1_at--1071--1371Chr05:4234270..4234294 (25 bp)
AGAGCCTCGACTGCGTGCGCAAGGT
LOC_Os05g07880
OsAffx.4272.1.S1_at--148--1991Chr05:4234261..4234285 (25 bp)
ACTGCGTGCGCAAGGTGAACGCCAT
LOC_Os05g07880
OsAffx.4272.1.S1_at--486--3951Chr05:4234234..4234258 (25 bp)
CGGACAGGTGCTGGGACCTCTACGC
LOC_Os05g07880
OsAffx.4272.1.S1_at--169--4351Chr05:4234098..4234122 (25 bp)
CCAGGCGCGGATCCTTGGCGCCAAA
LOC_Os05g07880
Target Sequence 
CGAGTACGAGCCACCGGAGCAGGCCGAGCCCGACACCGGCTACTTCCACGCGCAGCAGAATCGCCGCTTCATGATCTACG
TCCACACCAAGATGATGATCGTGGACGACGAGTACATCATCGTCGGGTCGGCGAACATCAACCAGAGGTCGATGGACGGG
GCGAGGGACTCGGAGATCGCCATGGGAGCGTACCAGCCGCACCACCTGGCGGCGGCGGGGCGGCCGGCGAGGGGGCAGGT
GCACGGGTTCAGGATGGCGCTGTGGTACGAGCACCTCGGTACCGTCGACGAGGCGTTCCAGCGGCCGGAGAGCCTCGACT
GCGTGCGCAAGGTGAACGCCATGGCGGACAGGTGCTGGGACCTCTACGCCGGCGACGGGCCGGAGCGCGACCTCCCCGGC
CACCTGCTCACCTACCCCGTCGGCGTCGCCGGCGACGGCACCATCACGCAGCTCCCCGGCGTGGAGTTCTTCCCGGACAC
CCAGGCGCGGATCCTTGGCGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis