Browse Element(s) Details


OsAffx.26775.1.S1_at

Description tigr:9633.m00693
TID=OsAffx.26775.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0776411/11Carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed
LOC_Os05g07780Os.20602.2.S1_x_at11/115+4169636..4171816hAT family dimerisation domain containing protein
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA
LOC_Os05g07810Os.51752.2.S1_x_at9/115+4183629..4185712universal stress protein family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26775.1.S1_at--220--8391Chr05:4162771..4162795 (25 bp)
GGCGAGCACGGGTTGCGGCAGGCGT
LOC_Os05g07764
OsAffx.26775.1.S1_at--4--7911Chr05:4162644..4162668 (25 bp)
GGTTCGGGATGAAGCCTCGCGGCGT
LOC_Os05g07764
OsAffx.26775.1.S1_at--1161--1651Chr05:4159920..4159944 (25 bp)
AGCCCTCAGCTGTACGGTGACAACA
LOC_Os05g07764
OsAffx.26775.1.S1_at--524--8752Chr10:8479784..8479803 (20 bp)
TGTACGGTGACAACAACCCAAGGTT
NONE
OsAffx.26775.1.S1_at--981--991Chr05:4159894..4159914 (21 bp)
AGGTTCTTCACGTATTGGACAAATG
LOC_Os05g07764
OsAffx.26775.1.S1_at--21--6871Chr05:4159768..4159903 (25 bp)
GTATTGGACAAATGATGCGTACCAG
LOC_Os05g07764
OsAffx.26775.1.S1_at--778--591Chr05:4159754..4159778 (25 bp)
ATGCGTACCAGGAGACGGGTTGCTA
LOC_Os05g07764
OsAffx.26775.1.S1_at--688--5991Chr05:4159743..4159767 (25 bp)
GAGACGGGTTGCTACAACCTGCACT
LOC_Os05g07764
OsAffx.26775.1.S1_at--281--10731Chr05:4159735..4159759 (25 bp)
TTGCTACAACCTGCACTGCTCAGGG
LOC_Os05g07764
OsAffx.26775.1.S1_at--56--1991Chr05:4159721..4159745 (25 bp)
ACTGCTCAGGGTTCGTCCAGACCAA
LOC_Os05g07764
OsAffx.26775.1.S1_at--75--1711Chr05:4159701..4159725 (25 bp)
ACCAACAGCCGGATCGCCATGGGCG
LOC_Os05g07764
Target Sequence 
GGCGAGCACGGGTTGCGGCAGGCGTGGTGGGCCGCCGGCGAGGCGTGCCCGGAGGGGACGATACCGGTGAGGCGGACGAC
GGAGGCCGACCTGCTGCGAGCCAGCTCCGCCGCCGCCGCCGGCGGCCGGTTCGGGATGAAGCCTCGCGGCGTCGGCGTCG
TCGGCGGCGCGGCGCGGCGCGACTCCACCAGCAGCGGCCACGAGCATGCGGTGGGGTACATGAGCGGGGGGCAATTCTAC
GGGGCGAAGGCGAGCCTGAACGTGTGGCCGGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCTCCCAGATCTGGCTCAT
CTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAGGCCGGATGGCAGGTGAGCCCTCAGCTGTACGGTGACAACAACC
CAAGGTTCTTCACGTATTGGACAAATGATGCGTACCAGGAGACGGGTTGCTACAACCTGCACTGCTCAGGGTTCGTCCAG
ACCAACAGCCGGATCGCCATGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis