Browse Element(s) Details


Os.53590.1.S1_at

Description gb:AK073439.1
DB_XREF= gi:32983462
TID=Os.53590.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044H02, full insert sequence.
FL= gb:AK073439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g077301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53590.1.S1_at--976--5451Chr05:4139512..4139536 (25 bp)
GAACGTCGACCTGAACATGGTGCTT
LOC_Os05g07730
Os.53590.1.S1_at--1099--9811Chr05:4139433..4139457 (25 bp)
TAAAAGCTCAGCTGCTATCCAGGGC
NONE
Os.53590.1.S1_at--240--251Chr05:4139380..4139404 (25 bp)
ATATCACTGAACATCCAATCCACGG
NONE
Os.53590.1.S1_at--1055--6091Chr05:4139356..4139380 (25 bp)
GAGTCATTTTGTGCATTCGCGTGAA
NONE
Os.53590.1.S1_at--565--10631Chr05:4139341..4139365 (25 bp)
TTCGCGTGAACGTCAGATTCGGAAT
NONE
Os.53590.1.S1_at--113--1391Chr05:4139291..4139315 (25 bp)
AGACCAGGTCTGCTCGATTTGCTGT
NONE
Os.53590.1.S1_at--748--6731Chr05:4139247..4139271 (25 bp)
GTTCTTTATCTCTTTGATTCGCCTG
NONE
Os.53590.1.S1_at--233--4151Chr05:4139228..4139252 (25 bp)
CGCCTGGTGTTGGTTGGTACTAGCA
NONE
Os.53590.1.S1_at--782--731Chr05:4139124..4139148 (25 bp)
ATGTTAATGATTCACGGGCTGCACT
NONE
Os.53590.1.S1_at--1157--7571Chr05:4139109..4139133 (25 bp)
GGGCTGCACTGTTCTGTTTAACTAG
NONE
Os.53590.1.S1_at--657--6811Chr05:4139094..4139118 (25 bp)
GTTTAACTAGTCACGCTGCTAAGCT
NONE
Target Sequence 
GAACGTCGACCTGAACATGGTGCTTGATAAGGTGATGAACGGCGCCGACGCCCAGCCCCAGAGAGGCTGGCACGGGCGTT
AAAAGCTCAGCTGCTATCCAGGGCCATGAAGCGCTCTCCCATCAACCTGTGCATATCACTGAACATCCAATCCACGGAGT
CATTTTGTGCATTCGCGTGAACGTCAGATTCGGAATTCATATTGTCGATTTGGTGGGGAACAGACCAGGTCTGCTCGATT
TGCTGTTGGTGATCTTACAGCAAGTGTTCTTTATCTCTTTGATTCGCCTGGTGTTGGTTGGTACTAGCAGTAGTACTAAA
ACTTGGTATCTGATCTCCAAAAACGAGTTTTTCTAGAGATGGTGTTATGGTTGTTATCCACTGATGATATGTTAATGATT
CACGGGCTGCACTGTTCTGTTTAACTAGTCACGCTGCTAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53590.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis