Browse Element(s) Details


Os.11021.1.S1_s_at

Description gb:AK066128.1
DB_XREF= gi:32976146
TID=Os.11021.1
CNT=176
FEA=FLmRNA
TIER=FL+Stack
STK=30
UG=Os.11021 (NCBI UniGene Cluster)
UG_TITLE=O.sativa R22 mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052E20, full insert sequence.
FL= gb:AK062208.1 gb:AK066128.1 gb:AK120033.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0770011/1160S ribosomal protein L10-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11021.1.S1_s_at--472--1771Chr05:4121273..4121297 (25 bp)
ACCTGTGCTAGGGTGGATATTGGCC
LOC_Os05g07700
Os.11021.1.S1_s_at--708--1031Chr05:4121298..4121322 (25 bp)
AGGTCCTCCTTTCTGTGCGGTGCAA
LOC_Os05g07700
Os.11021.1.S1_s_at--837--2451Chr05:4121327..4121351 (25 bp)
AACAATGCTGTCCATGCCAGCGAAG
LOC_Os05g07700
Os.11021.1.S1_s_at--552--6831Chr05:4121519..4121543 (25 bp)
GTTTCACCAAGTTCAGCCGCGATGA
LOC_Os05g07700
Os.11021.1.S1_s_at--473--6951Chr05:4121567..4121591 (25 bp)
GTAGAATCATGCCTGATGGTGTCAA
LOC_Os05g07700
Os.11021.1.S1_s_at--393--1571Chr05:4121773..4121797 (25 bp)
AGCTACTTGGTTGCCATGGTCGCCT
LOC_Os05g07700
Os.11021.1.S1_s_at--415--3771Chr05:4121826..4121850 (25 bp)
CTCTCAGCCGCTTAGATATATCTAT
LOC_Os05g07700
Os.11021.1.S1_s_at--620--10191Chr05:4121842..4121866 (25 bp)
TATATCTATCCTTATCATCTGTGGG
LOC_Os05g07700
Os.11021.1.S1_s_at--812--8791Chr05:4121920..4121944 (25 bp)
TGTTGAACCCTGAATCACCAAGTGT
LOC_Os05g07700
Os.11021.1.S1_s_at--474--1111Chr05:4121940..4121964 (25 bp)
AGTGTCTGGTGCTATATTGCCTGGT
LOC_Os05g07700
Os.11021.1.S1_s_at--93--91Chr05:4121955..4121979 (25 bp)
ATTGCCTGGTCTGAAGCTATCTTGT
LOC_Os05g07700
Target Sequence 
ACCTGTGCTAGGGTGGATATTGGCCAGGTCCTCCTTTCTGTGCGGTGCAAGCCCAACAATGCTGTCCATGCCAGCGAAGC
CCTCCGTCGTGCCAAGTTCAAGTTCCCTGGTCGCCAAAAGATCATTGAGAGTAGAAAGTGGGGTTTCACCAAGTTCAGCC
GCGATGAATACGTCAGGCTTAAGAGCGAGGGTAGAATCATGCCTGATGGTGTCAATGCTAAGCTACTTGGTTGCCATGGT
CGCCTCTCTGCTCGTGCCCCCGGGAAGGCCTTCCTCTCAGCCGCTTAGATATATCTATCCTTATCATCTGTGGGAAACGA
AATATCGGACCTTTTTGTTTGTTTGTAGACTCGATCATATATCACTTTGTTGAACCCTGAATCACCAAGTGTCTGGTGCT
ATATTGCCTGGTCTGAAGCTATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11021.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis