Browse Element(s) Details


Os.35448.1.S1_at

Description gb:AK067480.1
DB_XREF= gi:32977498
TID=Os.35448.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35448 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106B08, full insert sequence.
FL= gb:AK067480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0769011/11Thioredoxin H-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0042542biological_processresponse to hydrogen peroxide
GO:0005829cellular_componentcytosol
GO:0005489molecular_functionelectron transporter activity
GO:0005515molecular_functionprotein binding
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35448.1.S1_at--48--2411Chr05:4114699..4114723 (25 bp)
AAACAGATGTAGTGATTGCATGCAA
LOC_Os05g07690
Os.35448.1.S1_at--1145--6571Chr05:4114686..4114710 (25 bp)
GATTGCATGCAAATTGTCCTAAAGT
LOC_Os05g07690
Os.35448.1.S1_at--387--7211Chr05:4114671..4114695 (25 bp)
GTCCTAAAGTTAACTGAAGTCCTGA
LOC_Os05g07690
Os.35448.1.S1_at--955--1131Chr05:4114654..4114678 (25 bp)
AGTCCTGACATTAGAGTAGCTTCTC
LOC_Os05g07690
Os.35448.1.S1_at--213--6091Chr05:4114641..4114665 (25 bp)
GAGTAGCTTCTCACTTAGCATATCT
LOC_Os05g07690
Os.35448.1.S1_at--611--3651Chr05:4114628..4114652 (25 bp)
CTTAGCATATCTATAGGTCAGGGTG
LOC_Os05g07690
Os.35448.1.S1_at--220--3691Chr05:4114618..4114642 (25 bp)
CTATAGGTCAGGGTGCATGTTGTAA
LOC_Os05g07690
Os.35448.1.S1_at--511--7331Chr05:4114606..4114630 (25 bp)
GTGCATGTTGTAATGTTCTTCCGAT
LOC_Os05g07690
Os.35448.1.S1_at--807--6731Chr05:4114592..4114616 (25 bp)
GTTCTTCCGATTTAACAACTCTCTT
LOC_Os05g07690
Os.35448.1.S1_at--628--10491Chr05:4114581..4114605 (25 bp)
TTAACAACTCTCTTGTATTCTCTGC
LOC_Os05g07690
Os.35448.1.S1_at--477--10211Chr05:4114566..4114590 (25 bp)
TATTCTCTGCAGGATTTCAGCTCAT
LOC_Os05g07690
Target Sequence 
AAACAGATGTAGTGATTGCATGCAAATTGTCCTAAAGTTAACTGAAGTCCTGACATTAGAGTAGCTTCTCACTTAGCATA
TCTATAGGTCAGGGTGCATGTTGTAATGTTCTTCCGATTTAACAACTCTCTTGTATTCTCTGCAGGATTTCAGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis