Browse Element(s) Details


OsAffx.14582.1.S1_at

Description tigr:9633.m00684
TID=OsAffx.14582.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ribosomal L10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0770011/1160S ribosomal protein L10-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14582.1.S1_at--365--1191Chr05:4121469..4121493 (25 bp)
AGTACCATAAGCTCATGTTCCGTTC
LOC_Os05g07700
OsAffx.14582.1.S1_at--671--731Chr05:4121483..4121507 (25 bp)
ATGTTCCGTTCCTAACTTGCACTTT
LOC_Os05g07700
OsAffx.14582.1.S1_at--932--3731Chr05:4121494..4121518 (25 bp)
CTAACTTGCACTTTCTTGTTCAGGG
LOC_Os05g07700
OsAffx.14582.1.S1_at--149--3191Chr05:4121589..4121613 (25 bp)
CAATGCTAAGGTAAACACGCTGTTT
LOC_Os05g07700
OsAffx.14582.1.S1_at--589--9071Chr05:4121623..4121647 (25 bp)
TGCTTATCTTGGGTCCTATCAGGAT
LOC_Os05g07700
OsAffx.14582.1.S1_at--1095--9071Chr05:4121702..4121726 (25 bp)
TGCTATTGTAATTGTTCTCGTATGC
LOC_Os05g07700
OsAffx.14582.1.S1_at--268--6731Chr05:4121715..4121739 (25 bp)
GTTCTCGTATGCATCGTTGCGGATA
LOC_Os05g07700
OsAffx.14582.1.S1_at--458--6671Chr05:4121730..4121754 (25 bp)
GTTGCGGATAATCTAATCTTTGTCA
LOC_Os05g07700
OsAffx.14582.1.S1_at--1154--10791Chr05:4121749..4121773 (25 bp)
TTGTCAATACTGTCTCTATGGTGCA
LOC_Os05g07700
OsAffx.14582.1.S1_at--67--8731Chr05:4121759..4121783 (25 bp)
TGTCTCTATGGTGCAGCTACTTGGT
LOC_Os05g07700
OsAffx.14582.1.S1_at--253--1311Chr05:4122009..4122033 (25 bp)
AGATGACTTTCGTGTCGCTAATCCG
LOC_Os05g07700
Target Sequence 
AGTACCATAAGCTCATGTTCCGTTCCTAACTTGCACTTTCTTGTTCAGGGGTTTCACCAAGTTCAGCCGCGATGAATACG
TCAGGCTTAAGAGCGAGGGTAGAATCATGCCTGATGGTGTCAATGCTAAGGTAAACACGCTGTTTCTAAACTAATGCTTA
TCTTGGGTCCTATCAGGATGAGTAACTTATTTTGTTAAAATCCTTTTTCGCTTTGCTTTTATGACCTGTCAATTGCTATT
GTAATTGTTCTCGTATGCATCGTTGCGGATAATCTAATCTTTGTCAATACTGTCTCTATGGTGCAGCTACTTGGTTGCCA
TGGTCGCCTCTCTGCTCGTGCCCCCGGGAAGGCCTTCCTCTCAGCCGCTTAGATATATCTATCCTTATCATCTGTGGGAA
ACGAAATATCGGACCTTTTTGTTTGTTTGTAGACTCGATCATATATCACTTTGTTGAACCCTGAATCACCAAGTGTCTGG
TGCTATATTGCCTGGTCTGAAGCTATCTTGTGTTGAACATCTTTATCTGAAATATATATCAGATGACTTTCGTGTCGCTA
ATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis