Browse Element(s) Details


Os.52206.1.S1_at

Description gb:AK065618.1
DB_XREF= gi:32975636
TID=Os.52206.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52206 (NCBI UniGene Cluster)
UG_TITLE=GPT mRNA for putative glucose-6-phosphatephosphate-tranlocator, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028M22, full insert sequence.
FL= gb:AB060277.1 gb:AK065618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0767011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07626Os.51188.1.S1_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.2.S1_x_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.1.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.3.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07632Os.12102.1.S1_at11/115+4074790..4078739haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein
LOC_Os05g07650Os.12314.1.S1_at11/115+4085128..4087899Endomembrane protein 70 containing protein, expressed
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed
LOC_Os05g07690Os.35448.1.S1_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.2.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07690Os.11045.1.S1_s_at11/115+4114128..4117309Thioredoxin H-type, putative, expressed
LOC_Os05g07700Os.11021.1.S1_s_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700OsAffx.14582.1.S1_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07700Os.11021.2.S1_x_at11/115+4120143..412206760S ribosomal protein L10-3, putative, expressed
LOC_Os05g07710Os.52780.1.S1_at10/115+4123002..4126984SVP1-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52206.1.S1_at--282--6311Chr05:4096285..4096309 (25 bp)
GATGAGCCTCTCAAGGTACCGATGT
LOC_Os05g07670
Os.52206.1.S1_at--428--1531Chr05:4096258..4096282 (25 bp)
AGCTCAAAGTACTCAAGGGCGTGAA
LOC_Os05g07670
Os.52206.1.S1_at--1050--2911Chr05:4096217..4096241 (25 bp)
AAGGCGGCATTATACAGGATTCAAT
LOC_Os05g07670
Os.52206.1.S1_at--889--6611Chr05:4096173..4096197 (25 bp)
GTTGGAAGCCAACCCAGATTGTAAT
LOC_Os05g07670
Os.52206.1.S1_at--505--5031Chr05:4096053..4096077 (25 bp)
GCAGATCTGCCTTGAAACTTAGACA
LOC_Os05g07670
Os.52206.1.S1_at--387--6911Chr05:4096011..4096035 (25 bp)
GTATCTGGATATGCTCCACATCTTT
LOC_Os05g07670
Os.52206.1.S1_at--884--431Chr05:4095992..4096016 (25 bp)
ATCTTTCTCACTGTAACTTCCTATG
LOC_Os05g07670
Os.52206.1.S1_at--935--6491Chr05:4095951..4095975 (25 bp)
GATAGACTTCATTCTTTTGTACCAA
LOC_Os05g07670
Os.52206.1.S1_at--941--6391Chr05:4095909..4095933 (25 bp)
GATCTGCAAGGTTCAAGTTTGTGAC
LOC_Os05g07670
Os.52206.1.S1_at--623--6811Chr05:4095879..4095903 (25 bp)
GTTTATGTTTACTTTGGACCCAGTG
LOC_Os05g07670
Os.52206.1.S1_at--1109--4171Chr05:4095861..4095885 (25 bp)
CCCAGTGATGGAGCTTTTGTATATT
LOC_Os05g07670
Target Sequence 
GATGAGCCTCTCAAGGTACCGATGTGGAGCTCAAAGTACTCAAGGGCGTGAAAATACCTTCCTTTTAGAAGGCGGCATTA
TACAGGATTCAATTTGGTAGGCGGATAGTAGGGTTGGAAGCCAACCCAGATTGTAATGAACATTCCAGTTACATTTTTGG
GTTTATTTAACATTACTATCTAGTATCTACTAGCAGTAAAAGGGTTCTTGGGAGGATTTTACCTTCAAGATAGCAGATCT
GCCTTGAAACTTAGACAACAGATATTGTATGATTGTATCTGGATATGCTCCACATCTTTCTCACTGTAACTTCCTATGGG
AACATAGATCCACAGATAGACTTCATTCTTTTGTACCAAAGATCCAGAGAACTAGAGATCTGCAAGGTTCAAGTTTGTGA
CTGTAAGTTTATGTTTACTTTGGACCCAGTGATGGAGCTTTTGTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis