Browse Element(s) Details


Os.5838.1.S1_at

Description gb:AK106195.1
DB_XREF= gi:32991404
TID=Os.5838.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E08, full insert sequence.
FL= gb:AK106195.1 gb:AK069800.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0764011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07600Os.51097.1.S1_at11/115+4054026..4056408expressed protein
LOC_Os05g07610NANA5+4061788..4062336hypothetical protein
LOC_Os05g07620OsAffx.32109.2.S1_x_at2/115+4069961..4070335hypothetical protein
LOC_Os05g07620OsAffx.32109.3.S1_x_at1/115+4069961..4070335hypothetical protein
LOC_Os05g07626Os.51188.1.S1_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.2.S1_x_at11/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.1.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07626OsAffx.32109.3.S1_x_at1/115+4071485..4072618expressed protein
LOC_Os05g07632Os.12102.1.S1_at11/115+4074790..4078739haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os05g07640Os.22560.1.A1_s_at11/115+4080613..4083928expressed protein
LOC_Os05g07640Os.5838.1.S1_at11/115+4080613..4083928expressed protein
LOC_Os05g07650Os.12314.1.S1_at11/115+4085128..4087899Endomembrane protein 70 containing protein, expressed
LOC_Os05g07670Os.52206.1.S1_at11/115+4095830..4099281integral membrane protein, putative, expressed
LOC_Os05g07680Os.6821.1.S1_at11/115+4107214..4112242CENP-E like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5838.1.S1_at--431--9651Chr05:4083517..4083541 (25 bp)
TCAGTAGATACCGAGTTGTCAGTCA
LOC_Os05g07640
Os.5838.1.S1_at--984--1771Chr05:4083526..4083550 (25 bp)
ACCGAGTTGTCAGTCAAATTTCATG
LOC_Os05g07640
Os.5838.1.S1_at--87--3671Chr05:4083557..4083581 (25 bp)
CTTTCAACTTCAAACAAGAGCCAGT
LOC_Os05g07640
Os.5838.1.S1_at--66--5871Chr05:4083574..4083598 (25 bp)
GAGCCAGTGGATTGTCTTGTATAAA
LOC_Os05g07640
Os.5838.1.S1_at--783--7471Chr05:4083769..4083793 (25 bp)
GTGTGTTTTTATGCTTCTTGTGGAA
LOC_Os05g07640
Os.5838.1.S1_at--843--9571Chr05:4083784..4083808 (25 bp)
TCTTGTGGAAATCTTCATCCTTGAA
LOC_Os05g07640
Os.5838.1.S1_at--563--10571Chr05:4083821..4083845 (25 bp)
TTCTCGGTTTTTCTAGGATGGAGGA
LOC_Os05g07640
Os.5838.1.S1_at--832--7851Chr05:4083846..4083870 (25 bp)
GGTATGTATTAAACTGCTATGGCGC
LOC_Os05g07640
Os.5838.1.S1_at--698--1971Chr05:4083858..4083882 (25 bp)
ACTGCTATGGCGCATTGCTTTCTGC
LOC_Os05g07640
Os.5838.1.S1_at--152--4591Chr05:4083867..4083891 (25 bp)
GCGCATTGCTTTCTGCTTGTAAGAA
LOC_Os05g07640
Os.5838.1.S1_at--998--1211Chr05:4083903..4083927 (25 bp)
AGTTAATCAAGTTTGGTCATCCTGA
LOC_Os05g07640
Target Sequence 
TCAGTAGATACCGAGTTGTCAGTCAAATTTCATGGGCGAGCTTTCAACTTCAAACAAGAGCCAGTGGATTGTCTTGTATA
AATACATACATTGCAAACGATTTAGCTATTATGACATGAAAAGAGGAAAGAGAAATGGACATTAGGTTTTCCCTTGGCAG
AATGGTATTTTTAGCAAACTATTGTCCGACTGTCACTAACTCACTTCAGTTGATGTATTGCGTGATGATTTTGTCTGATG
CATTTTTTTTGTGTGTGTTTTTATGCTTCTTGTGGAAATCTTCATCCTTGAAAAAACCAACAACTTCTCGGTTTTTCTAG
GATGGAGGAGGTATGTATTAAACTGCTATGGCGCATTGCTTTCTGCTTGTAAGAATCACTATGTCAAGTTAATCAAGTTT
GGTCATCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis