Browse Element(s) Details


OsAffx.14584.3.S1_at

Description tigr:9633.m00691
TID=OsAffx.14584.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0775011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07720Os.13941.1.S1_x_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07720Os.13941.1.S1_s_at11/115+4130924..4133913Allinase, C-terminal domain containing protein, expressed
LOC_Os05g07730Os.53590.1.S1_at1/115+4139455..4142800hypothetical protein
LOC_Os05g07740OsAffx.14583.1.S1_at11/115+4150945..4154446leucine-rich repeat protein kinase, putative, expressed
LOC_Os05g07750OsAffx.14584.3.S1_x_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07750OsAffx.14584.3.S1_at11/115+4156750..4157286hypothetical protein
LOC_Os05g07764OsAffx.26775.1.S1_at11/115+4158028..4163796Carboxyl-terminal proteinase, putative, expressed
LOC_Os05g07780Os.20602.2.S1_x_at11/115+4169636..4171816hAT family dimerisation domain containing protein
LOC_Os05g07790Os.53811.1.S1_at11/115+4173297..4178469expressed protein
LOC_Os05g07799NANA5+4180901..4181962NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14584.3.S1_at--492--9771Chr05:4157113..4157137 (25 bp)
TAAGGGACTTATTACCGGAAGTGCT
LOC_Os05g07750
OsAffx.14584.3.S1_at--1094--10371Chr05:4157105..4157129 (25 bp)
TTATTACCGGAAGTGCTCCGGCGGA
LOC_Os05g07750
OsAffx.14584.3.S1_at--835--131Chr05:4157103..4157127 (25 bp)
ATTACCGGAAGTGCTCCGGCGGATG
LOC_Os05g07750
OsAffx.14584.3.S1_at--691--3591Chr05:4156858..4156882 (25 bp)
CATTGCCATCCTTGGTAGGGCTTTC
LOC_Os05g07750
OsAffx.14584.3.S1_at--217--10691Chr05:4156856..4156880 (25 bp)
TTGCCATCCTTGGTAGGGCTTTCCT
LOC_Os05g07750
OsAffx.14584.3.S1_at--1072--4291Chr05:4156853..4156877 (25 bp)
CCATCCTTGGTAGGGCTTTCCTCGG
LOC_Os05g07750
OsAffx.14584.3.S1_at--1080--2951Chr05:4156848..4156872 (25 bp)
CTTGGTAGGGCTTTCCTCGGCGTTG
LOC_Os05g07750
OsAffx.14584.3.S1_at--120--5351Chr05:4156844..4156868 (25 bp)
GTAGGGCTTTCCTCGGCGTTGGCCT
LOC_Os05g07750
OsAffx.14584.3.S1_at--813--4351Chr05:4156811..4156835 (25 bp)
CCACCGAGGTCACAACACTGAAAAA
LOC_Os05g07750
OsAffx.14584.3.S1_at--627--6151Chr05:4156806..4156830 (25 bp)
GAGGTCACAACACTGAAAAAATCAA
LOC_Os05g07750
OsAffx.14584.3.S1_at--840--10411Chr05:4156780..4156804 (25 bp)
TTATTCTCAAATTCTTGATGTGCCA
LOC_Os05g07750
Target Sequence 
TAAGGGACTTATTACCGGAAGTGCTCCGGCGGATGGCGGGCGCCGGCGCTGGCGCGCGCCGCGTCAGCAACTACTGCAAG
TTCGACAGCTAGCTGCTGACGCTCTTCACCTCGTCGCTCTACATCTCCGGCCTGCTCACCTCCGCGCTCCTCCGTCGTGG
GTCACGGCTAGCCGCGGCCGCCGCGCGTCCATGATCCTCGGCGGCTTCGCCTACATCGCCGGCGTGGCGGCCAGCGGCAC
CGCTGTCAACGTGTCCATTGCCATCCTTGGTAGGGCTTTCCTCGGCGTTGGCCTCGGCTTCACCACCGAGGTCACAACAC
TGAAAAAATCAAATTATTCTCAAATTCTTGATGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14584.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis