Browse Element(s) Details


OsAffx.31777.1.S1_at

Description tigr:9634.m02986
TID=OsAffx.31777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3098011/11hypothetical protein
LOC_Os05g080402/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30940Os.55063.1.S1_at10/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30940OsAffx.20579.1.S1_x_at1/116+17996704..17999862pentatricopeptide, putative, expressed
LOC_Os06g30950Os.35365.1.S1_at11/116+18001698..18008342integral membrane protein, putative, expressed
LOC_Os06g30960OsAffx.15689.1.S1_at11/116+18011565..18012696hypothetical protein
LOC_Os06g30970Os.322.1.S1_at11/116+18014523..18016698Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os06g30980OsAffx.31777.1.S1_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.31777.1.S1_x_at11/116+18022967..18025688hypothetical protein
LOC_Os06g30980OsAffx.25156.5.S1_x_at1/116+18022967..18025688hypothetical protein
LOC_Os06g30990OsAffx.435.1.S1_at1/116+18027001..18029743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30990Os.43124.1.S1_at1/116+18027001..18029743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g31000Os.47114.1.S1_x_at1/116+18030977..18040297retrotransposon protein, putative, unclassified
LOC_Os06g31010NANA6+18040939..18041874retrotransposon protein, putative, unclassified
LOC_Os06g31020NANA6+18045214..18051952retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31777.1.S1_at--972--2211Chr06:18025051..18025075 (25 bp)
ACAAGTCTCTCCGTGCTGACCTTGA
LOC_Os06g30980
OsAffx.31777.1.S1_at--399--9291Chr06:18025060..18025084 (25 bp)
TCCGTGCTGACCTTGAAGCGGCGAA
LOC_Os06g30980
OsAffx.31777.1.S1_at--145--7312Chr06:18025063..18025087 (25 bp)
GTGCTGACCTTGAAGCGGCGAACAA
LOC_Os06g30980
OsAffx.31777.1.S1_at--637--4752Chr06:18025065..18025089 (25 bp)
GCTGACCTTGAAGCGGCGAACAAGC
LOC_Os06g30980
OsAffx.31777.1.S1_at--304--4011Chr06:18025180..18025333 (25 bp)
CGACCTTGGAAGCAGCGGGCTCGGT
LOC_Os06g30980
OsAffx.31777.1.S1_at--436--7671Chr06:18025382..18025406 (25 bp)
GGGATTTGTCCTTAGCCTTTTGCAT
LOC_Os06g30980
OsAffx.31777.1.S1_at--1032--6511Chr06:18025384..18025408 (25 bp)
GATTTGTCCTTAGCCTTTTGCATGC
LOC_Os06g30980
OsAffx.31777.1.S1_at--180--8711Chr06:18025388..18025412 (25 bp)
TGTCCTTAGCCTTTTGCATGCGCAC
LOC_Os06g30980
OsAffx.31777.1.S1_at--344--6611Chr06:18025533..18025557 (25 bp)
GATTGTGTGAAAACTCGACTCCGTG
LOC_Os06g30980
OsAffx.31777.1.S1_at--823--10771Chr06:18025535..18025559 (25 bp)
TTGTGTGAAAACTCGACTCCGTGAG
LOC_Os06g30980
OsAffx.31777.1.S1_at--1123--2631Chr06:18025560..18025584 (25 bp)
AACCTTGAAAGGATCACGAGGGACG
LOC_Os06g30980
Target Sequence 
ACAAGTCTCTCCGTGCTGACCTTGAAGCGGCGAACAAGCGGGATGCCGAACGAGACCAACAACTTGCTTTGGCCGAAGAG
AAGATCAAATCCCTCGAAGCTCGTCTTGTCTCGGCCGAAGCTGCTGCCGCGACCTTGGAAGCAGCGGGCTCGGTCGTTGA
AGTGGCTGGTGCCTACGGGGACTGCTGCGCTTGTGTTTCGGCGGGATTTGTCCTTAGCCTTTTGCATGCGCACGGCTGTG
ACCACATCGGGAATTTTCCCGACTTCGTGAAAGAAGAATGGCCTAGCAACACGCAGTGTTCTGGGGCTGCCTTAAGGGCC
TTTCGAAAAGGGTTTTGGGAGGATGGTGGTCGGGATTGTGTGAAAACTCGACTCCGTGAGAACCTTGAAAGGATCACGAG
GGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis